PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_12400V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 412aa MW: 42872.3 Da PI: 8.8576

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_12400V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.5e-12	39	63	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++Ck++H++ Pp3c26_12400V3.1.p 39 QPECQYYLKTGTCKFGATCKYHHPR 63 799********************96 PP
2	zf-CCCH	39.6	8.5e-13	85	109	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG CkyG +CkF+H++ Pp3c26_12400V3.1.p 85 EKECAYYMRTGSCKYGVTCKFHHPQ 109 689********************97 PP
3	zf-CCCH	37.2	5e-12	241	266	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +C+++H++ Pp3c26_12400V3.1.p 241 GQPECQYYMKTGECKFGTTCRYHHPK 266 5799********************96 PP
4	zf-CCCH	34.6	3.3e-11	287	311	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C+f+ r+G+Ck+G++CkF H+ Pp3c26_12400V3.1.p 287 GNPPCSFYTRYGICKFGPTCKFDHP 311 669*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-5	36	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.385	36	64	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-9	39	63	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-6	40	65	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	42	64	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	82	109	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	82	110	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	83	110	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-10	85	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-5	88	108	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-5	239	266	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.906	239	267	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-9	242	266	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-6	243	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-4	245	265	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.9E-6	285	312	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.047	285	313	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	289	311	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-5	289	311	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MWKGLWGLGV IGGFNHPANR KLGAVVARGK GEYPERVGQP ECQYYLKTGT CKFGATCKYH 60 HPREKAGSTG RVLLNVLGLP LRLGEKECAY YMRTGSCKYG VTCKFHHPQP ATVGGMVPVP 120 FGSGGGPSSP APQGYAAGAL PSWPLARSPY PLPRLQTHSS YGPMLPLQQG IMSMPGWSYQ 180 GPVGPADGHQ QGYVFGGAPQ GEHVSGFGPY MQGSSAVGLP AHQATQSVVG QKESLFPERL 240 GQPECQYYMK TGECKFGTTC RYHHPKDRST PSSTCHLSAM GLPLRPGNPP CSFYTRYGIC 300 KFGPTCKFDH PLVGSLTYSP SAGSLADVPV APYPIGSSPM NLAPSAYSEG LLERQGSGEA 360 GGYAEDGIGH HVTSRSNSEG GGVSSGSGVN GGVGGAGSGS GPTQAESVGK S*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MWKGLWGLGV IGGFNHPANR KLGAVVARGK GEYPERVGQP ECQYYLKTGT CKFGATCKYH  60
HPREKAGSTG RVLLNVLGLP LRLGEKECAY YMRTGSCKYG VTCKFHHPQP ATVGGMVPVP  120
FGSGGGPSSP APQGYAAGAL PSWPLARSPY PLPRLQTHSS YGPMLPLQQG IMSMPGWSYQ  180
GPVGPADGHQ QGYVFGGAPQ GEHVSGFGPY MQGSSAVGLP AHQATQSVVG QKESLFPERL  240
GQPECQYYMK TGECKFGTTC RYHHPKDRST PSSTCHLSAM GLPLRPGNPP CSFYTRYGIC  300
KFGPTCKFDH PLVGSLTYSP SAGSLADVPV APYPIGSSPM NLAPSAYSEG LLERQGSGEA  360
GGYAEDGIGH HVTSRSNSEG GGVSSGSGVN GGVGGAGSGS GPTQAESVGK S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9773	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366524.1	0.0	zinc finger CCCH domain-containing protein 33-like
Swissprot	Q2R4J4	1e-110	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
Swissprot	Q9SWF9	1e-110	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A2K1ICT4	0.0	A0A2K1ICT4_PHYPA; Uncharacterized protein
STRING	PP1S6_324V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1247	17	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	2e-89	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c26_12400V3.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]