PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c26_12270V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 408aa MW: 42482.8 Da PI: 8.6978

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_12270V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.9	9.8e-10	39	59	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++Ck++H++ Pp3c26_12270V3.2.p 39 QYYLKTGTCKFGATCKYHHPR 59 59*****************96 PP
2	zf-CCCH	39.7	8.4e-13	81	105	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG CkyG +CkF+H++ Pp3c26_12270V3.2.p 81 EKECAYYMRTGSCKYGVTCKFHHPQ 105 689********************97 PP
3	zf-CCCH	36.3	9.4e-12	236	262	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +C+++H++ Pp3c26_12270V3.2.p 236 PGQPECQYYMKTGDCKFGTTCRYHHPK 262 5789*********************96 PP
4	zf-CCCH	33.1	9.7e-11	286	307	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+ r+G+Ck+G++CkF H+ Pp3c26_12270V3.2.p 286 PCSFYTRYGICKFGPTCKFDHP 307 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.82	37	59	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.709	39	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	39	59	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	78	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	78	106	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	79	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-10	81	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-5	84	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.216	235	263	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-5	235	262	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.2E-9	237	262	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.85E-6	239	264	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-4	241	262	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	281	308	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.807	281	309	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-5	285	307	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-8	286	307	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MVGVRKRGRM GMWCGRWRED GVSGGRIDSW GCVGGGGVQY YLKTGTCKFG ATCKYHHPRE 60 KAGSTGRVLL NVLGLPLRLG EKECAYYMRT GSCKYGVTCK FHHPQPATVG GMVPVPFGSG 120 GGPSSPAPQG YAAGALPSWP LARSPYPLPR LQTHSSYGPM LPLQQGIMSM PGWSYQGPVG 180 PPDSHQQGYV FGGAPQGEHV SGYGPYVQGS SAVGLLAHQA TQSVGPQKES LFPERPGQPE 240 CQYYMKTGDC KFGTTCRYHH PKDRTTPSPT CHLSPIGLPL RPGNLPCSFY TRYGICKFGP 300 TCKFDHPLVG SFPYSMSAGS LADGPVATYP IGSSPMNLAP SAYSEGLLEQ QGSGEAGGYA 360 EDGIGHDVTS RSNSEGGGVS SGSGVNGGVG GAGSGSGPTQ AESVSKS*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MVGVRKRGRM GMWCGRWRED GVSGGRIDSW GCVGGGGVQY YLKTGTCKFG ATCKYHHPRE  60
KAGSTGRVLL NVLGLPLRLG EKECAYYMRT GSCKYGVTCK FHHPQPATVG GMVPVPFGSG  120
GGPSSPAPQG YAAGALPSWP LARSPYPLPR LQTHSSYGPM LPLQQGIMSM PGWSYQGPVG  180
PPDSHQQGYV FGGAPQGEHV SGYGPYVQGS SAVGLLAHQA TQSVGPQKES LFPERPGQPE  240
CQYYMKTGDC KFGTTCRYHH PKDRTTPSPT CHLSPIGLPL RPGNLPCSFY TRYGICKFGP  300
TCKFDHPLVG SFPYSMSAGS LADGPVATYP IGSSPMNLAP SAYSEGLLEQ QGSGEAGGYA  360
EDGIGHDVTS RSNSEGGGVS SGSGVNGGVG GAGSGSGPTQ AESVSKS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9773	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366898.1	0.0	zinc finger CCCH domain-containing protein ZFN-like
Swissprot	Q9SWF9	1e-95	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A2K1ICS8	0.0	A0A2K1ICS8_PHYPA; Uncharacterized protein
STRING	PP1S6_315V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	9e-75	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c26_12270V3.2.p