PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_10480V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 362aa    MW: 39131.2 Da    PI: 6.7647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_10480V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.2e-09133175348
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                         +kGVr++     +++eIr p++   +++++lg++gt  eAa+a++a
  Pp3c26_10480V3.4.p 133 FKGVRQRAGVRGFLVEIRPPKW---KRTIWLGTYGTDAEAAAAYDA 175
                         89***9987666*******987...7*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-14132190IPR001471AP2/ERF domain
SMARTSM003801.2E-6132195IPR001471AP2/ERF domain
PROSITE profilePS5103212.734132196IPR001471AP2/ERF domain
PfamPF008471.6E-5133175IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-8133189IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPDLDESHHY RDVDTQLLEC SGLPGWASCS CGTGIKSEFY GRCLNCQDAY IDEKCGVKPV  60
VWRSTDYTPA ALPAAVNVLA EVDGAASPLA QQCKRVTRPR SKSPRIASSS SFAPPTKPRG  120
RPPNGSRTRQ QSFKGVRQRA GVRGFLVEIR PPKWKRTIWL GTYGTDAEAA AAYDAGVFYT  180
KKKTQYNFPH LKATFPHLPA NLRLDHPDDS EKIKNFVQVQ AKEAAQNIRN LASNVNGDAP  240
AAVPAQTAAT LSTVAVPKIA AAAATVATPI TESALKVEDL ACVDCEAPAF ASTSTASSPS  300
TDSSVHISPE WEGSMDLDSL PFIEMGMNPF IDLDALLPEP EGVFYSLFQS PYRLEEAVVW  360
R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.55790.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366968.10.0ethylene-responsive transcription factor 10-like
RefseqXP_024366969.10.0ethylene-responsive transcription factor 10-like
TrEMBLA0A2K1ICH70.0A0A2K1ICH7_PHYPA; Uncharacterized protein
STRINGPP1S6_134V6.10.0(Physcomitrella patens)