PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_8630V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 701aa    MW: 74114.5 Da    PI: 7.3174
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_8630V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.3e-42272349178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC+adls +k+yh+rhkvCe+hskap+++++g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+++
  Pp3c25_8630V3.2.p 272 RCQVEGCKADLSGCKDYHKRHKVCEMHSKAPKCIAAGIEQRFCQQCSRFHVLTEFDEGKRSCRRRLAGHNERRRKPHP 349
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-34268334IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.137270347IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-39271351IPR004333Transcription factor, SBP-box
PfamPF031106.2E-31273346IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MSQLDMAMAL NGSQVQSGIS SSGTQAPENC WSSTSWEHQN LTDSSSMEGS GEGDYVGSGR  60
MEWDLKANSW EWPENLTMVY PRQGDGNQRL HNNDWPASAA CSAVTLATTS AGASDFSIGL  120
ASGSSTISGT LSVSSGIPGV SAGRGSCGAD LSSVVKSEPD EHGMERTVVG TPATLSGHKD  180
RLLFDLGGVQ SRGNGEKFSE KNESARAAGD QSNGSSVVSG GGDSLNIGLK LGRRTYFEDS  240
FGGGQAKGSS SPAPSPPGKK QRVVAPNVQI ARCQVEGCKA DLSGCKDYHK RHKVCEMHSK  300
APKCIAAGIE QRFCQQCSRF HVLTEFDEGK RSCRRRLAGH NERRRKPHPE THSVFGLRNS  360
SSLYSDTSTL TMDAAPFYFL DSKRTSFLHR HGGSSLEDEF HPYSDSLKRT NPWSTLRRDY  420
SNLACQFQAA SAERQSIFST LSRPTADRLL SLLQNPKTQM PAPNTSTGMN LGGHHFLEGP  480
VGPLGQGLSL SSSTGGALGS LEQSRIDSCS QSLSSVSGLT NTGRALSLLS SQSWASRPPP  540
GASAPVSLGL SQAYDSTLEQ LVASSSDSSN RGSRFSHHLQ LPSGGSSSSS QQQFEKQFSV  600
QARDLESVGL NCGLTATGNG NILASLGGGY EETNSMLALV QAGQDIQALN SGSSHHARPT  660
IDLMQMPSSH SNGLHSQVSG GQYNGFSALR PFESSIFSTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-302733461184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404409DSLKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164920.0EF016492.1 Physcomitrella patens SBP-domain protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365731.10.0uncharacterized protein LOC112277518
TrEMBLA0A2K1IEA70.0A0A2K1IEA7_PHYPA; Uncharacterized protein
STRINGPP1S50_125V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-39squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Riese M,H
    Comparative analysis of the SBP-box gene families in P. patens and seed plants.
    Gene, 2007. 401(1-2): p. 28-37
    [PMID:17689888]