PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_8610V3.2.p
Common NamePHYPADRAFT_74970
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 621aa    MW: 67910.7 Da    PI: 9.3224
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_8610V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41284361178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+egC+adls+ak+yhrrhkvCe+hska +v+++g++qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+
  Pp3c25_8610V3.2.p 284 MCQAEGCKADLSQAKQYHRRHKVCEHHSKALNVVANGQTQRFCQQCSRFHLLGEFDDGKRSCRKRLADHNRRRRKPQP 361
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-36277346IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.838282359IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38283363IPR004333Transcription factor, SBP-box
PfamPF031103.2E-31285358IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MWSFSKSNIT YGTGCLYTIV SAIKACLEVS YSWRVLSPLS LNLVIQPTLV IRRIPVLPSF  60
VVYGMISSAN TNEQQDDPRR STENWDNPVA VVTLDQVPSQ YRSANRREWE WDPMILAQHP  120
GSGGSTDDVD GDRMKNQISA GTMSSLRASY NFNMLSAGLP SNFTQNHMGI YSSAGIRTFG  180
SLDGPAQVPT QPNTQSVHEP SGIPGLAAAS GAGLENDIRC NDQRRREFFA AGMHNHHVKR  240
EKDNDGHSRI GLNLGVRTYF STKETVANLG KRPTAGSPGS QVPMCQAEGC KADLSQAKQY  300
HRRHKVCEHH SKALNVVANG QTQRFCQQCS RFHLLGEFDD GKRSCRKRLA DHNRRRRKPQ  360
PNASAPGGTT AESPGMKRED NLSGFNRTND SKTMNMPLKS RSSLSSVSIE DSDNQKPGSV  420
GNNPNLRSSG KEYGRGAGDE KPQSRSGMQM SCQAVSGSEA QTLFSSMSTV PLMLQSTKKQ  480
RTMTEGTSNH GPDHSLHQHL QAGNSGQTGP NLSLSFFGGQ MGRIHTMPNT TYNGMEPRVS  540
WLRPSNTRSE LTQVVGRLGS LNYQHLMSTD SKSGITSASA NSSNSQEHDV QVYSPSSQNL  600
IPCDIASPEW MLGTIPEWML *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29276358184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341358KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164960.0EF016496.1 Physcomitrella patens SBP-domain protein 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365405.10.0uncharacterized protein LOC112277409
RefseqXP_024365406.10.0uncharacterized protein LOC112277409
RefseqXP_024365407.10.0uncharacterized protein LOC112277409
RefseqXP_024365409.10.0uncharacterized protein LOC112277409
RefseqXP_024365410.10.0uncharacterized protein LOC112277409
RefseqXP_024365411.10.0uncharacterized protein LOC112277409
TrEMBLA9S5U40.0A9S5U4_PHYPA; Predicted protein
STRINGPP1S50_127V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-48squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]