PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c25_4250V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 543aa MW: 58355.7 Da PI: 7.3942 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 339 | 388 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd + + r++lg+f+tae+Aa+a++aa+++l+g+ Pp3c25_4250V3.2.p 339 YRGVRKRP-WGRWSAEIRD----KiGKCRHWLGTFDTAEDAARAYDAAARRLRGA 388 9*******.**********....3335**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-31 | 338 | 401 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.761 | 338 | 395 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-29 | 338 | 395 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-21 | 338 | 396 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-13 | 339 | 387 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-15 | 339 | 395 | No hit | No description |
PRINTS | PR00367 | 6.4E-10 | 339 | 350 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-10 | 361 | 377 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MALHDLLVGS AAHTKRKWDT NLMSGAVKKE KIRSGILDEQ LESVGGACMR CLAPAFTYLC 60 KSCVSSLSDD NPDHHDSSGI HLHTRRSDNL AAQESFCRPD SKTWNQPQNS SSLSTGSMVS 120 CNPAQLIYQE TSWHQLSHLH HHLELSSLEY GNLQPPFLKS PTLPVAVSLV SGLEDVATSH 180 DYGIGAVVGQ HTLFGNLHPS RHFLDFPSKV IVGQCEPAPS KRQQQLLSAN SSCAVGSVTA 240 ETAYTNNTSE ASSQRGPFSV ALQNVYSSSQ VSTLDSEDLR VGHGRFGSGS HIGHHPYAYA 300 SAVTEEARPE AEHQYLSGSA MENATCSEGS PELVTRRAYR GVRKRPWGRW SAEIRDKIGK 360 CRHWLGTFDT AEDAARAYDA AARRLRGAKA RTNFELPATL LSPPPAESPD LLPGETMHAR 420 ASRLLLKPGF PLSRSTSANS KHGQPTPADA AKFHAQATEE TKPASNTSPM PSGQAVVCQG 480 SNGMSELDLS NGYGSPKSCS SLDSTQESSA TYNPSEAGTH FPPSRLFPSS RFSAVDSHPG 540 RS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 337 | 396 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024364841.1 | 0.0 | uncharacterized protein LOC112277106 | ||||
TrEMBL | A0A2K1IDR5 | 0.0 | A0A2K1IDR5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S340_16V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c25_4250V3.2.p |