PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_4250V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 543aa    MW: 58355.7 Da    PI: 7.3942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_4250V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19339388356
                AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr ++ +grW AeIrd    +  + r++lg+f+tae+Aa+a++aa+++l+g+
  Pp3c25_4250V3.1.p 339 YRGVRKRP-WGRWSAEIRD----KiGKCRHWLGTFDTAEDAARAYDAAARRLRGA 388
                        9*******.**********....3335**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-31338401IPR001471AP2/ERF domain
PROSITE profilePS5103222.761338395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-29338395IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-21338396IPR016177DNA-binding domain
PfamPF008479.6E-13339387IPR001471AP2/ERF domain
CDDcd000181.88E-15339395No hitNo description
PRINTSPR003676.4E-10339350IPR001471AP2/ERF domain
PRINTSPR003676.4E-10361377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MALHDLLVGS AAHTKRKWDT NLMSGAVKKE KIRSGILDEQ LESVGGACMR CLAPAFTYLC  60
KSCVSSLSDD NPDHHDSSGI HLHTRRSDNL AAQESFCRPD SKTWNQPQNS SSLSTGSMVS  120
CNPAQLIYQE TSWHQLSHLH HHLELSSLEY GNLQPPFLKS PTLPVAVSLV SGLEDVATSH  180
DYGIGAVVGQ HTLFGNLHPS RHFLDFPSKV IVGQCEPAPS KRQQQLLSAN SSCAVGSVTA  240
ETAYTNNTSE ASSQRGPFSV ALQNVYSSSQ VSTLDSEDLR VGHGRFGSGS HIGHHPYAYA  300
SAVTEEARPE AEHQYLSGSA MENATCSEGS PELVTRRAYR GVRKRPWGRW SAEIRDKIGK  360
CRHWLGTFDT AEDAARAYDA AARRLRGAKA RTNFELPATL LSPPPAESPD LLPGETMHAR  420
ASRLLLKPGF PLSRSTSANS KHGQPTPADA AKFHAQATEE TKPASNTSPM PSGQAVVCQG  480
SNGMSELDLS NGYGSPKSCS SLDSTQESSA TYNPSEAGTH FPPSRLFPSS RFSAVDSHPG  540
RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17337396161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364841.10.0uncharacterized protein LOC112277106
TrEMBLA0A2K1IDR50.0A0A2K1IDR5_PHYPA; Uncharacterized protein
STRINGPP1S340_16V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-15ERF family protein