PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c25_1760V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 584aa MW: 63386.2 Da PI: 6.1672 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.4e-16 | 79 | 129 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + ++ r +lg+f++aee aka++ a+++l+g+ Pp3c25_1760V3.4.p 79 RFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFDSAEEGAKAYDSAARALRGN 129 789******.7*********32...35*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.50E-27 | 78 | 135 | No hit | No description |
SuperFamily | SSF54171 | 4.97E-17 | 79 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-10 | 79 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-25 | 79 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-31 | 79 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-6 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MSSGSSAPKS SNAATSVLSQ ASGGFHCSDS RSRTPKRKRL SKPEESWNST ESSDTTPELD 60 SSSAEGPNRL SAGAMSKKRF VGVRQRPSGR WVAEIKDTTQ KIRLWLGTFD SAEEGAKAYD 120 SAARALRGNN TRTNFVPALQ SSESSIPASK AARLIFLRKI AASKSKCCEK DQKQKAGCDA 180 KKQQDATSQV DQDRQEQLPR FPAETTCPDL FNHRLSAGTK QEHDGTLLAA ENDAPKLEEG 240 LVSVAVSHQR HASSCNLSAS SSRIPTFDCP KPNLGVDKDN THLEIATDLP NITTAGQEVD 300 KPQSPIPLTE PDNDTLQGSS AISHQTITAL EAKPITNRSD HVSADAPHKE VARYGRDTKS 360 SEDGRCRVIK KSGCCGTQEA LTIPIGEMAE VEYASSNKST VLELNTQLDK PVLREKDLSE 420 TTLEVPEIPW SDFAFMDGLD IGCECSGAYT SDFDFSAEAI DRDSCNTSYV LKEQYMSDES 480 NKSLLEVPQY NHSASCSNTF QGCPLPTDPS SALESCCCLS PSSLSPQDHL RHSLFISPLL 540 QWKIRDRQPN VSIDISMAAA TSSDRCESSS HNYKSCPVRR IPH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024364997.1 | 0.0 | uncharacterized protein LOC112277174 | ||||
Refseq | XP_024364998.1 | 0.0 | uncharacterized protein LOC112277174 | ||||
Refseq | XP_024364999.1 | 0.0 | uncharacterized protein LOC112277174 | ||||
TrEMBL | A0A2K1IDG5 | 0.0 | A0A2K1IDG5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S233_111V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-27 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c25_1760V3.4.p |