PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_1760V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 529aa    MW: 57501.6 Da    PI: 6.1607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_1760V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-1679129256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++ GVr+++ +grWvAeI+d +   ++ r +lg+f++aee aka++ a+++l+g+
  Pp3c25_1760V3.3.p  79 RFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFDSAEEGAKAYDSAARALRGN 129
                        789******.7*********32...35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-2778135No hitNo description
SMARTSM003806.2E-3179142IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1779136IPR016177DNA-binding domain
PfamPF008471.0E-1079128IPR001471AP2/ERF domain
PROSITE profilePS5103219.04579136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-2579135IPR001471AP2/ERF domain
PRINTSPR003675.7E-68091IPR001471AP2/ERF domain
PRINTSPR003675.7E-6102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSGSSAPKS SNAATSVLSQ ASGGFHCSDS RSRTPKRKRL SKPEESWNST ESSDTTPELD  60
SSSAEGPNRL SAGAMSKKRF VGVRQRPSGR WVAEIKDTTQ KIRLWLGTFD SAEEGAKAYD  120
SAARALRGNN TRTNFVPALQ SSESSIPASK AARLIFLRKI AASKSKCCEK DQKQKAGCDA  180
KKQQDATSQV DQDRQEQLPR FPAETTCPDL FNHRLSAGTK QEHDGTLLAA ENDAPKLEEG  240
LVSVAVSHQR HASSCNLSAS SSRIPTFDCP KPNLGVDKDN THLEIATDLP NITTAGQEVD  300
KPQSPIPLTE PDNDTLQGSS AISHQTITAL EAKPITNRSD HVSADAPHKE VARYGRDTKS  360
SEDGRCRVIK KSGCCGTQEA LTIPIGEMAE VEYASSNKST VLELNTQLDK PVLREKDLSE  420
TTLEVPEIPW SDFAFMDGLD IGCECSGAYT SDFDFSAEAI DRDSCNTSYV LKEQYMSDES  480
NKSLLEWKIR DRQPNVSIDI SMAAATSSDR CESSSHNYKS CPVRRIPH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364997.10.0uncharacterized protein LOC112277174
RefseqXP_024364998.10.0uncharacterized protein LOC112277174
RefseqXP_024364999.10.0uncharacterized protein LOC112277174
TrEMBLA0A2K1IDG50.0A0A2K1IDG5_PHYPA; Uncharacterized protein
STRINGPP1S233_111V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-27related to AP2 11