PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c25_1190V3.2.p | ||||||||
Common Name | PHYPADRAFT_169663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 422aa MW: 47637.5 Da PI: 8.6608 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3e-09 | 320 | 362 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 ++ykG+r + +++WvAeIr+ + +++lg++ +++Aa a++a Pp3c25_1190V3.2.p 320 PKYKGIRLR--NNKWVAEIRVaK-----TkIKVWLGSYTRKKDAALAYDA 362 79****976..58********55.....34******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.74E-11 | 320 | 362 | No hit | No description |
SMART | SM00380 | 2.1E-9 | 321 | 384 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.864 | 321 | 378 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-15 | 321 | 379 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-9 | 321 | 371 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MVESRRVRWK TRLNVFVWMK HLFDRKREEC DIYFVNLLFG SPTHTPSPTP PRTPTPTSPP 60 NPPRTSASAY GYAPAADCGH KAWTRGGQHD NEASCSNPSS LYFDPEFCAD YVEQHAIPSL 120 PQLRRSGMTV PAQTFESNLE TFHPRQGEEL FPNQGMSSSD AMSVDSSVVP NPIPRTYEAW 180 LHPYAVPNQY QQTSPTDCDI SVNDYVNECT DSEFTDATEI FSQSNCSYQV GHPSVSMMSV 240 DQVENIESLR DTGNSSTQSI QTQMMSQYVN FLERELGLAG TAKGRWRAIA YLVKNYSTLL 300 RSRRQNGASS SSIMGEEDSP KYKGIRLRNN KWVAEIRVAK TKIKVWLGSY TRKKDAALAY 360 DAGLHHCNQK KLKKFNFRES IQKLGASQYI NIIKLREEEM KTAVKKLAED HVKAYGSTNI 420 R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 351 | 372 | RKKDAALAYDAGLHHCNQKKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365081.1 | 0.0 | uncharacterized protein LOC112277223 | ||||
TrEMBL | A9TER7 | 0.0 | A9TER7_PHYPA; Predicted protein | ||||
STRING | PP1S215_64V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 9e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c25_1190V3.2.p |
Entrez Gene | 5940319 |
Publications ? help Back to Top | |||
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