PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_7120V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 559aa    MW: 60586.2 Da    PI: 7.1897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_7120V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32332390159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+kkversa+d + v++tYeg+H+h 
  Pp3c24_7120V3.1.p 332 MEDGYKWRKYGQKAVKNSPHPRSYYRCTNPKCPVRKKVERSADDSESVITTYEGTHTHV 390
                        58********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-34317391IPR003657WRKY domain
SuperFamilySSF1182901.44E-28324391IPR003657WRKY domain
PROSITE profilePS5081131.066327392IPR003657WRKY domain
SMARTSM007749.6E-38332391IPR003657WRKY domain
PfamPF031066.1E-26333389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSSGTPSPMM RDNDDDGVDR RREGDLEGLM RSLGEDVYSQ DYLNRHHAHE QVLHLQQNEF  60
SSPQPMFPTP TTSFSQSPSF LTELLSLPSP VTTSCWNTTV SDPFLQSAVP REMLSSIATD  120
TINRSLVMPH SQPQSQLEAL WDSLPEHSSW FAEQGGEPRH LYVDSLQELL SSTSAPWNQQ  180
HAVSSTAPVG VGKTSHSSGR SSVMQSPLGS PSLSSRASPA RLNSAASTIP STPNSSMSSD  240
SFSVAAAEED ETHHGTGSSS GRPLLQRPQS VTGPSGSTSA KRKSQDRVVN DNCDEIQSLD  300
CKKQSHKARR KGPKRVREPR YAIQTRSDVE IMEDGYKWRK YGQKAVKNSP HPRSYYRCTN  360
PKCPVRKKVE RSADDSESVI TTYEGTHTHV SPGTGSRGAA DAPLLAASSE YPPGGAPYVP  420
PAPLTPVILP LSSRVKYELA ASQRSSKDVA MMCSHDATST AGPLRTTSSI CKVEPRLHTS  480
PSNGGLLSAS LLRMQQLFAE PQLSGSEYLM MQDFQDSMCW GSIRTQHSGS SQEIVSLVPT  540
SAAASSGGLL EDIVRHRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26322392777Probable WRKY transcription factor 4
2lex_A3e-26322392777Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363553.10.0flocculation protein FLO11-like
TrEMBLA0A2K1IFW40.0A0A2K1IFW4_PHYPA; Uncharacterized protein
STRINGPP1S73_70V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-36WRKY DNA-binding protein 57