PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c24_20810V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 157aa MW: 17312.3 Da PI: 7.3068 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 23.9 | 4.5e-08 | 80 | 138 | 318 | 374 |
GRAS 318 rleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++aG + v++s +a+ q+ lll++ + s+ +++ +e g+l lgW+d Lv +SaW+ Pp3c24_20810V3.1.p 80 KLSKAGINVVAVSANAVHQVALLLSQgFCcSKDHMLLKEFGALKLGWEDLCLVPTSAWT 138 6899******************998634468889************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.5E-5 | 80 | 138 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MHLPLYDVSS CHSTTLRLMQ KLLLKIITMV EEDLLHRGLF HNQFIDALQY HFALGANHNN 60 KSLEHLMAEQ QLMSSSIGDK LSKAGINVVA VSANAVHQVA LLLSQGFCCS KDHMLLKEFG 120 ALKLGWEDLC LVPTSAWTST LILNCPSIHM VFANGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-23 | 5 | 138 | 224 | 379 | Protein SCARECROW |
5b3h_A | 7e-23 | 5 | 138 | 223 | 378 | Protein SCARECROW |
5b3h_D | 7e-23 | 5 | 138 | 223 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358664.1 | 1e-42 | protein SCARECROW-like isoform X1 | ||||
Refseq | XP_024358666.1 | 1e-42 | protein SCARECROW-like isoform X2 | ||||
TrEMBL | A0A2K1IHM5 | 1e-110 | A0A2K1IHM5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S101_16V6.1 | 2e-46 | (Physcomitrella patens) | ||||
STRING | PP1S85_139V6.1 | 5e-42 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-24 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c24_20810V3.1.p |