PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_20450V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 243aa MW: 28154 Da PI: 4.813

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_20450V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.2	4.1e-08	12	103	2	85
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ a++e e +++ r++ + W+ +s+++ e f r + C++ w+ l + y++i+++e+k +s+ +++c+ + Pp3c24_20450V3.6.p 12 WVDDEIYAMLESMLEPMREFVleskgvaaRASVGFNTWDYISDNLfDEYCFDRASMSCQQQWDTLLQSYRAIQDHESKIQSD-TRSCVSYW 101 8899999999888744444442221122245577899******667777*************************9655.55788777 PP trihelix 84 ql 85 ++ Pp3c24_20450V3.6.p 102 KI 103 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPSWRRVPGR PWVDDEIYAM LESMLEPMRE FVLESKGVAA RASVGFNTWD YISDNLFDEY 60 CFDRASMSCQ QQWDTLLQSY RAIQDHESKI QSDTRSCVSY WKIYAEERSN KKLPLAFDLE 120 WYKLIEKICA AKIVEENCMK KYRFMCSEFD EINTMSEYEF LSGVSTTTME SQTEVAAGSY 180 DSAAHGRNDK VGFRISTFTS ILKCGPGLGR KEGWKALNLI LGPRSCFYLQ FSSLLFWVEE 240 WL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363260.1	0.0	uncharacterized protein LOC112276311 isoform X1
TrEMBL	A9SPF9	1e-167	A9SPF9_PHYPA; Predicted protein
STRING	PP1S101_58V6.1	1e-168	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c24_20450V3.6.p