PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c24_20450V3.2.p | ||||||||
Common Name | PHYPADRAFT_82162 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 185aa MW: 21542.2 Da PI: 4.3126 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 26.1 | 2.2e-08 | 12 | 103 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W ++e+ a++e e +++ r++ + W+ +s+++ e f r + C++ w+ l + y++i+++e+k +s+ +++c+ + Pp3c24_20450V3.2.p 12 WVDDEIYAMLESMLEPMREFVleskgvaaRASVGFNTWDYISDNLfDEYCFDRASMSCQQQWDTLLQSYRAIQDHESKIQSD-TRSCVSYW 101 8999999999888744444442221122245577899********667777***************************9655.55788777 PP trihelix 84 ql 85 ++ Pp3c24_20450V3.2.p 102 KI 103 65 PP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MPSWRRVPGR PWVDDEIYAM LESMLEPMRE FVLESKGVAA RASVGFNTWD YISDNLFDEY 60 CFDRASMSCQ QQWDTLLQSY RAIQDHESKI QSDTRSCVSY WKIYAEERSN KKLPLAFDLE 120 WYKLIEKICA AKIVEENCMK KYRFMCSEFD EINTMSEYEF LSGVSTTTME SQTEVAAGSY 180 DSAD* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024363264.1 | 1e-136 | uncharacterized protein LOC112276311 isoform X3 | ||||
TrEMBL | A0A2K1IHJ3 | 1e-135 | A0A2K1IHJ3_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9SPF9 | 1e-134 | A9SPF9_PHYPA; Predicted protein | ||||
STRING | PP1S101_58V6.1 | 1e-134 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-07 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c24_20450V3.2.p |
Entrez Gene | 5931437 |
Publications ? help Back to Top | |||
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