PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_12830V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ARR-B
Protein Properties Length: 716aa    MW: 76996.5 Da    PI: 6.4683
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_12830V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28269322155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +pr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Pp3c24_12830V3.1.p 269 RPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMGVQGLTRENVASHLQKYRL 322
                         59*******************.********************************8 PP
2Response_reg79.79.8e-27781861109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+q+l +  y +v+++ +++eal +l+e    +D+++ D++mp+mdG++ll+     e++lp+i+v+++ge + + + 
  Pp3c24_12830V3.1.p  78 VLVVDDNPTCLMILEQMLVRCAY-RVTTCGKATEALSMLREDIgkFDVVISDVDMPDMDGFKLLELVGL-EMDLPVIMVSGNGETSAVMKG 166
                         89*********************.***************998777*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +eel++
  Pp3c24_12830V3.1.p 167 ITHGACDYLLKPVRIEELRN 186
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-3675200IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.0E-4275199No hitNo description
SMARTSM004481.4E-3176188IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.6277192IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2378187IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.25E-2879191No hitNo description
SuperFamilySSF466893.76E-19266326IPR009057Homeodomain-like
PROSITE profilePS5129411.573266325IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-29268327IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-24270322IPR006447Myb domain, plants
PfamPF002496.2E-8271321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGGGYLSSTV NMGESRDGGS PAMATLQQQQ KHQPLNPNHQ NPRNRSNSSP TNCYSNTAWG  60
AKPAKLDTPD EFPVGMRVLV VDDNPTCLMI LEQMLVRCAY RVTTCGKATE ALSMLREDIG  120
KFDVVISDVD MPDMDGFKLL ELVGLEMDLP VIMVSGNGET SAVMKGITHG ACDYLLKPVR  180
IEELRNIWQH VVRKKRREVK AVATKSVEEA GGCERPKRGG GADDADYTSS ATDTTDSNWK  240
LTKRRKGEFK DENEEDNEQE NDDPSTLKRP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL  300
ELMGVQGLTR ENVASHLQKY RLYLKRLSGV TSQQGNMSAH FGGSDPFCMM PPDMSLANGQ  360
LTPQALAKFH MLGRMNATNG IGFSGGGLDP GMNQMFLQDL PRPPQLNSML RNNTGLLASV  420
PNGLQHLEQL SEPHHVHVVN ELEHYPSNTK VYPQLNGNLD VSVGPLGAAN GNLASNPNSD  480
TLLMHILHSR ASQQGVGSPS TLPQPRCGLN PTHLLSNDIN FAPVGSLPNL AGSLGPAVGL  540
SAIPGSAGGR DLSPSVGGSG ASLSSPLGSL VRRPLMAEEQ SNPVNSTNGT YSMAHSGQSP  600
KPSGDTLPTP LNEGLEQQQP LWALYQNPMN QLSHGPSQGF PHDSLQWSVL TENLSFGDMG  660
QSLSAGLISQ FSSQGQDNGI GFAPPSQRGS YTRQSVSFPA SSALDGRMVR SSYEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21268328464ARR10-B
5lxu_A2e-21269325157Transcription factor LUX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28800.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363770.10.0two-component response regulator ARR12-like
TrEMBLA0A2K1IGK70.0A0A2K1IGK7_PHYPA; Uncharacterized protein
STRINGPP1S16_393V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-96response regulator 2