PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_960V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 438aa    MW: 48124.4 Da    PI: 6.5379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_960V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000345577123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  C++ F+ +  L  H+++H
  Pp3c23_960V3.1.p 55 FECRFCDMKFPKSQALGGHMNRH 77
                      89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2015582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MMLTNNNRDS QDTTPSTSSI PPAQNQAAVD LSSGDGDEGN PNKRRKPEED SDNKFECRFC  60
DMKFPKSQAL GGHMNRHRVE REHEEIQKAR NLLIAQQHHS PPYYAAAQYY SRMDGASTSV  120
DPTRNFSSTA GSFMTPQMPY YQPQAQSSVQ NWPGNQLLPL QPNLDSAHTN LQGTNYLNPT  180
DNTRPYQSLP MLQREIPMHG LQHPQHAPQQ APRNSVPLNY SDARTLLHSS DPGGGMLQYH  240
FESGQQLQHR FLQNHSGGST LQDVVSPPSA NSNQQQQLGQ RTHSRTTFMQ HARERLEVQV  300
DQSGNLPQST HNPSQQQQRH GHEANYATNP SAVAAAAVGE LPSLQIQLDS AHFQVPRPFS  360
HHSSFDHKPD VVGSMLSGLG NGEPVGVGVG NSSSSSSSVF HLAGLDDHDP HEFRASAAMD  420
PSDRDALHTH LEGSAET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362193.10.0uncharacterized protein LOC112275785 isoform X2
TrEMBLA0A2K1IHQ60.0A0A2K1IHQ6_PHYPA; Uncharacterized protein
STRINGPP1S210_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein