PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_800V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 594aa    MW: 62933.2 Da    PI: 6.6087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_800V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000557799123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C  C+++F  +  L  H+++H
  Pp3c23_800V3.3.p 77 YECRFCNMRFAKSQALGGHMNRH 99
                      99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.04E-574103No hitNo description
PROSITE profilePS5015710.74177104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0010094Biological Processspecification of carpel identity
GO:0010097Biological Processspecification of stamen identity
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGGVAGDSSI LVALPSKPNP RRPPPLSFPL SSAAGGEADW EDALASPAEQ SRPKMKQKST  60
DDGCTTDEEG DLSKTLYECR FCNMRFAKSQ ALGGHMNRHR LEREKEQYQH AQQLVSSLAQ  120
QQMPRTWNTM AAELNPSGTG AALARLSNQM TGAPRVDGSR PQLPPQISFN STRQPISTTC  180
SNSIPTSPSS NYYLPSNSSS KNLQHLQWKV DGFDSNGTIP RSGSQEGLNA LDSTLQGDGM  240
RDDFLSGMLR PRQDGGSFVS SQFNNMNPML SRGLGGPGSN SFHGSGPDMI QGGSGTTGLQ  300
FCHSRTNSHQ PQSRMNDVLR QLASTSTPLN STLMQGSLPN DVKPPGASFA AMRTSASAPA  360
YFMQGNNNVP QFNQQQMGRP SESLLQPFQT SINRPLGNAS TSQHHAMSRS SLFPSYSFNN  420
LGAPNFGSLA PSHDPNALQG FENNFAGVGQ NGSMSRPPLT QTSSGSSASG SFGICGGHEG  480
MYGVKMQSDD AYNQLSVNQD MGASHISHGA LMGSTVAAPM VASVVHEVVD GNHCESMNTT  540
TVESGDVSGL SAPARYQSTD FSSGSPEWKH LNSPSGQLEA NISSPTSDDY CSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362086.10.0uncharacterized protein LOC112275716 isoform X1
RefseqXP_024362087.10.0uncharacterized protein LOC112275716 isoform X1
TrEMBLA0A2K1IHP60.0A0A2K1IHP6_PHYPA; Uncharacterized protein
STRINGPP1S210_60V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.14e-08C2H2 family protein