PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_7680V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CPP
Protein Properties Length: 620aa    MW: 66201.9 Da    PI: 7.994
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_7680V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.22.8e-12142182142
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        k++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  Pp3c23_7680V3.1.p 142 KKCKQCNCKNSRCLKLYCECFASGTYCEG-CNCVNCCNNVEN 182
                        589*************************9.********9875 PP
2TCR51.42.1e-16226264139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN 
  Pp3c23_7680V3.1.p 226 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCVDCKNF 264
                        589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-13142182IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.179143266IPR005172CRC domain
PfamPF036381.8E-8145179IPR005172CRC domain
SMARTSM011146.0E-20226267IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-13229264IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDVSDTPVIE APTAAPTQAS TTTPGSVAPG NQPPVVTEAV PQQAKSQPLI YTPVSLGLPR  60
HAVRPMDVDP SHVIMAVSTP QTSQVGEHPT RKAVPRQLDF TTMYGDPAGP QENSVRTPQP  120
SLKHGSPRQR SRSFDSKDGT PKKCKQCNCK NSRCLKLYCE CFASGTYCEG CNCVNCCNNV  180
ENETVRQEAV EATLERNPNA FRPKIFSSPG MRDLREDAGE HPLAGKHNKG CHCKKSGCLK  240
KYCECFQANI LCSDNCKCVD CKNFDGSEER RALFQGDHNM SLNFLQPLGG NGVSPNAPAY  300
LSPSPLLKKR RTHELVFSGP GLKEQVPLKK TSSLPLQLTP GITTAPSLSL ALSSTIDSTP  360
ANQGVSPAVP PVKLIHKSLL AGVVQIDAIQ ELCKLLVVVS SEAQKDFLAK HSLPDTRRLR  420
VNGETRASLE PSPTATKVDE RNHEHKAEKL SSDRAAPATG PDDGDADGPQ RPTSPGTLAL  480
MCDEKDPLFT APPSPIGGLA AEDIGTCGSS HAALLHAEQE QAILLAYRDC LRRIISVGNR  540
RASQYSNDIS HSEMCVAASV QRNEQEGGAP RFTRPIISPG QYGLLSAPGT SPSCTFGLKP  600
SNLGLPLQSP GGPPTRVSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3214527512132Protein lin-54 homolog
5fd3_B2e-3214527512132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KRRTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361559.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1IIF00.0A0A2K1IIF0_PHYPA; Uncharacterized protein
STRINGPP1S10_254V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-93Tesmin/TSO1-like CXC domain-containing protein