PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_7530V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 462aa MW: 49782.3 Da PI: 7.7352 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++I++ ++ gR++k+c++rw + Pp3c23_7530V3.4.p 19 KGPWSPEEDAALQQLVEKYGARNWSLISKGIP-GRSGKSCRLRWCNQ 64 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 73 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++Tt Ede ++ a+ q+G++ W+tIar ++ gRt++ +k++w++ Pp3c23_7530V3.4.p 73 PFTTAEDETIIAAHSQHGNK-WATIARLLP-GRTDNAIKNHWNST 115 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.431 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-32 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-17 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-18 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.77E-16 | 21 | 63 | No hit | No description |
SMART | SM00717 | 1.4E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.357 | 70 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 73 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MSMGGPMRCS VLEEFDRIKG PWSPEEDAAL QQLVEKYGAR NWSLISKGIP GRSGKSCRLR 60 WCNQLSPQVQ HRPFTTAEDE TIIAAHSQHG NKWATIARLL PGRTDNAIKN HWNSTLRRRH 120 TVERPSRSEC AEQQFNHAGR VSHVDEDDGG SVDGWKRSNK EISSDGSVQE KGGWEVDSHR 180 MKRLHVESES PRELSATFMH APQVFRPIPR SSAFSSFSPN GVFTPPTSEP SETSEVTDPP 240 TSLSLSLPGS SPARKEQSSS EDSLLARQVS IASHVPGSQS QLVSPDLHGQ GRWEGGISVD 300 QKFPDRFPTP TFSVPTASSP TQLVGSQLSA LSRAAPTGYN LSGNPPTAEM MSAAVRSAVA 360 QAFGPVLQAQ GVQGTQTWDP PRPPTLSHGL DAAVNAGLVA LMRDMVANEV QKYMAAVHSS 420 SCAPYFPSFG PDHASVGSHI KYSGQSDFLG SMATSSPRKA G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-37 | 16 | 119 | 4 | 107 | B-MYB |
1mse_C | 1e-37 | 18 | 119 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-37 | 18 | 119 | 3 | 104 | C-Myb DNA-Binding Domain |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362152.1 | 0.0 | transcription factor MYB77-like | ||||
Swissprot | Q9SN12 | 3e-58 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2K1IID2 | 0.0 | A0A2K1IID2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_267V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 4e-58 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_7530V3.4.p |
Publications ? help Back to Top | |||
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