PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_7400V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ARR-B | ||||||||
Protein Properties | Length: 710aa MW: 76082.8 Da PI: 6.4292 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.3 | 1.7e-28 | 267 | 320 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G+++A+Pk+ilelm+v+gLt+e+v+SHLQkYRl Pp3c23_7400V3.1.p 267 KPRVVWSVELHQQFVSAVNQL-GIDRAVPKRILELMGVHGLTRENVASHLQKYRL 320 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.3 | 1.1e-25 | 74 | 182 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdDep+ +++l+++l++ y +v+++ +++al ll+e +Dl++ D++mp+mdG++ll+ e++lp+i+++++ge + + + + Pp3c23_7400V3.1.p 74 VLVVDDEPVTLMVLEKMLTNCSY-RVTTCGRATDALCLLREDIdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSGNGETSAVMKGI 163 89*********************.***************887667*******************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ Pp3c23_7400V3.1.p 164 THGACDYLLKPVRQKELRN 182 ****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 9.11E-36 | 71 | 196 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-41 | 71 | 205 | No hit | No description |
SMART | SM00448 | 8.3E-32 | 72 | 184 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.585 | 73 | 188 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.0E-23 | 74 | 183 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.23E-28 | 75 | 187 | No hit | No description |
SuperFamily | SSF46689 | 1.54E-19 | 264 | 324 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.558 | 264 | 323 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-30 | 265 | 325 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 267 | 320 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 269 | 319 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MGGGHLSSRS GDDMAEGNLG PTMTSLQQQP LPLIPNPHNS RPCYSATNSS SSNARGANLA 60 KLDTPDAFPA GLRVLVVDDE PVTLMVLEKM LTNCSYRVTT CGRATDALCL LREDIDKFDL 120 VISDVNMPDM DGFKLLELVG LEMDLPVIMM SGNGETSAVM KGITHGACDY LLKPVRQKEL 180 RNIWQHVVRK RRQDVKIARE TKSVEEGGVC VREKRTGPDD VDYTSSATGD TGDGNWRKKR 240 KGENQTFKDE TEEDVEQEND DPSTMKKPRV VWSVELHQQF VSAVNQLGID RAVPKRILEL 300 MGVHGLTREN VASHLQKYRL YLKRISGVSN QQSNMSAHFG GPEPFSMLSP DMSVSIANGQ 360 LNPQALAQFH MLGRMNSSNG VGFSGGLDPM LSHQIFLQDL PRPPHLNNML KRNTGMLSPL 420 PNAMPHLEPQ LAECHHSSHH LPVMNELEDF STNSKVFPQM NGNLDVSIAS LGVGNGGLGS 480 NPSNDTLLMH MLQSRTAQQG SALSPTLPQP RGGLTPTHLL SNDVGFASVG SLPNLAPAVG 540 LSAITGSGGA RDLSPSAVGT GGSLSSPLGP LVRRPLMVEE PSNLVNFSMA PSVQSPKPGG 600 GAGVNESLDQ QPTMWGLYNP LTQLNPGHSR GLSQDNFPWS GLAVNLGLGD SQSLSVGMSS 660 GLGAQFSPQG QDHGIGFASP GQGSYNRQNV SFPVSSALDG RMVRSSYEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 263 | 326 | 1 | 64 | ARR10-B |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.18033 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362455.1 | 0.0 | two-component response regulator ARR2-like | ||||
TrEMBL | A0A2K1IIC5 | 0.0 | A0A2K1IIC5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_278V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-108 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_7400V3.1.p |