PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_3520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 442aa    MW: 49832.5 Da    PI: 8.2409
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_3520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.83.3e-3073126255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWt +LH++F  ave+LGG+ekAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Pp3c23_3520V3.1.p  73 PRLRWTADLHHCFKVAVERLGGHEKATPKMVLQLMDVKGLTIAHVKSHLQMYRS 126
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-2969128IPR009057Homeodomain-like
SuperFamilySSF466896.45E-1471129IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-2273127IPR006447Myb domain, plants
PfamPF002491.9E-674125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDFLGKQSLD GSEEDRDIDG GAGSQTSPRV SSEDLSSESN TTSTTNAQDS AANGARTPGC  60
RGKVRQYVRS RLPRLRWTAD LHHCFKVAVE RLGGHEKATP KMVLQLMDVK GLTIAHVKSH  120
LQMYRSMKND ESVQSDIGYW REGHLHPTNL WLQATPERSR ISDVLIHEQT AEIPMRSSSV  180
KKQLETEWEM RRREYDARIT FTMLMEGRVE YPAIITPTTR VESRSSTQLL KLLDGSGDSG  240
PGRRRPSDVW TPFSELDFKN QQDDAHRNPF PSFASRRLDI TSRYTNDPLK FQGCEIHKQQ  300
SDLTRPQTQR PTVQDSFDRY SYDHNSECNW RQNRYSTDPN SSLSLSRPHS WPGCTVPSQK  360
GIILSHRSTA MATKPVPIVD FLSSPQSRNI GRKGAPGDGL RLHLTMSTGS GSEGHDEGPE  420
SLYRKKEEDV DLTLDLTMST R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1574128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1574128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1574128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1574128357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361958.10.0uncharacterized protein LOC112275647
RefseqXP_024361959.10.0uncharacterized protein LOC112275647
TrEMBLA0A2K1II050.0A0A2K1II05_PHYPA; Uncharacterized protein
STRINGPP1S82_168V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-29G2-like family protein