PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_21930V3.2.p
Common NamePHYPADRAFT_172189
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family BES1
Protein Properties Length: 357aa    MW: 37835.4 Da    PI: 8.1633
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_21930V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822174.17.3e-54299196
              DUF822  1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92
                        ++++r ptwkErEnnkrRERrRRaiaaki+aGLR +Gnyklpk++DnneVlkALc eAGw+ve+DGttyrkgskp+ + +e+  s +++sp++
  Pp3c23_21930V3.2.p  2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRLYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGSKPPaQPMEVCTSPSEVSPTN 94
                        5899************************************************************************999999999999***** PP

              DUF822 93 slq.s 96
                        s+   
  Pp3c23_21930V3.2.p 95 SYPgA 99
                        99833 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.0E-513105IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRLYGNY KLPKHCDNNE VLKALCVEAG  60
WTVEEDGTTY RKGSKPPAQP MEVCTSPSEV SPTNSYPGAT DGTSLIPWLK GLSSNGGSGA  120
ATPSSSAGLP PLHVMHGGSS SAPVTPPLSS PTHRGPPVKP DWDHIKETDH HPHGFPPTGT  180
PTWNHHPFLA AAAAAAQAAA SNQSHLRPGY CDTPDGARTP IEEGDSEISP EAALEFATVC  240
GSNSSKWANG VRVRTSSEGR LLSGMAGLGP FPSANSDSPL ETFSHPWRNP MQKSISMPVS  300
PVSSRMKGSF GDRLGRCPSE LEFPGAVQGL GSLWDGLAPE VGGKMKLPAD DLELKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-22676372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.108270.0protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362740.10.0protein BZR1 homolog 1-like
TrEMBLA9TVH70.0A9TVH7_PHYPA; Predicted protein
STRINGPP1S335_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-38BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]