PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c23_21930V3.1.p | ||||||||
Common Name | PHYPADRAFT_172189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 357aa MW: 37835.4 Da PI: 8.1633 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 174.1 | 7.3e-54 | 2 | 99 | 1 | 96 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR +Gnyklpk++DnneVlkALc eAGw+ve+DGttyrkgskp+ + +e+ s +++sp++ Pp3c23_21930V3.1.p 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRLYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGSKPPaQPMEVCTSPSEVSPTN 94 5899************************************************************************999999999999***** PP DUF822 93 slq.s 96 s+ Pp3c23_21930V3.1.p 95 SYPgA 99 99833 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.0E-51 | 3 | 105 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRLYGNY KLPKHCDNNE VLKALCVEAG 60 WTVEEDGTTY RKGSKPPAQP MEVCTSPSEV SPTNSYPGAT DGTSLIPWLK GLSSNGGSGA 120 ATPSSSAGLP PLHVMHGGSS SAPVTPPLSS PTHRGPPVKP DWDHIKETDH HPHGFPPTGT 180 PTWNHHPFLA AAAAAAQAAA SNQSHLRPGY CDTPDGARTP IEEGDSEISP EAALEFATVC 240 GSNSSKWANG VRVRTSSEGR LLSGMAGLGP FPSANSDSPL ETFSHPWRNP MQKSISMPVS 300 PVSSRMKGSF GDRLGRCPSE LEFPGAVQGL GSLWDGLAPE VGGKMKLPAD DLELKL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-22 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.10827 | 0.0 | protonema| sporophyte |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362740.1 | 0.0 | protein BZR1 homolog 1-like | ||||
TrEMBL | A9TVH7 | 0.0 | A9TVH7_PHYPA; Predicted protein | ||||
STRING | PP1S335_68V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1595 | 15 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78700.1 | 2e-38 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c23_21930V3.1.p |
Entrez Gene | 5945799 |
Publications ? help Back to Top | |||
---|---|---|---|
|