PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_21450V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 506aa    MW: 54873.4 Da    PI: 5.7215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_21450V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20223273256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a++aa+ kl+ge
  Pp3c23_21450V3.3.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFETAEEAAMAYDAAAYKLRGE 273
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.32E-19222280No hitNo description
SMARTSM003801.9E-37223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-32223281IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-23223281IPR016177DNA-binding domain
PROSITE profilePS5103223.578223280IPR001471AP2/ERF domain
PfamPF008473.4E-14224273IPR001471AP2/ERF domain
PRINTSPR003677.0E-11224235IPR001471AP2/ERF domain
PRINTSPR003677.0E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAAVARNNMS NMLPGYDISF RSSYYGNGVH DGGGIGDCNI REVAGLDRLA QSTSDFKSLL  60
DGCNYRPSTQ TIKDEGVLCR DKLVVPPCTS PLMMDGSTAV YEPSPVMTEF HCVVPPPPQL  120
PSSYVGSDGL STFMVDQPLG VQNVHDLGNA EALLQQQFTN YFQAAQFMPQ QMYHLQAFPP  180
CRQEIDVQGL PRATWSSTTD LGPRAQVMKK TAEKRIGVPR TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFETAEEAA MAYDAAAYKL RGEYARLNFP RQQCNSGIPG GGQSPVDEVG  300
VPSALSRRGP TSTLTAKLNE IAYRKALSAN TVGGEQSKVH PPVKPGDITG LRDPTHLAAL  360
SSEVVDLCPV PGAGGLDYSN FRDSGSSTST SPCQSPPESS SASELRYVSS PSPDATGESS  420
DDLYNLADLL LSSDPNAEEQ LDCSWDVFGF GVKDSQFDLT DSQGSEDFLR FAGSTSPAAT  480
KKLSVTPTSV TMSPPRKFNV WRRCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20220287269ATERF1
3gcc_A3e-20220287269ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361933.10.0uncharacterized protein LOC112275627
TrEMBLA0A2K1IK880.0A0A2K1IK88_PHYPA; Uncharacterized protein
STRINGPP1S335_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-27ERF family protein