PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_21450V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 506aa MW: 54873.4 Da PI: 5.7215 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 223 | 273 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a++aa+ kl+ge Pp3c23_21450V3.2.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFETAEEAAMAYDAAAYKLRGE 273 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.32E-19 | 222 | 280 | No hit | No description |
SMART | SM00380 | 1.9E-37 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-32 | 223 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-23 | 223 | 281 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.578 | 223 | 280 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-14 | 224 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 246 | 262 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAAVARNNMS NMLPGYDISF RSSYYGNGVH DGGGIGDCNI REVAGLDRLA QSTSDFKSLL 60 DGCNYRPSTQ TIKDEGVLCR DKLVVPPCTS PLMMDGSTAV YEPSPVMTEF HCVVPPPPQL 120 PSSYVGSDGL STFMVDQPLG VQNVHDLGNA EALLQQQFTN YFQAAQFMPQ QMYHLQAFPP 180 CRQEIDVQGL PRATWSSTTD LGPRAQVMKK TAEKRIGVPR TKLYRGVRQR HWGKWVAEIR 240 LPRNRTRLWL GTFETAEEAA MAYDAAAYKL RGEYARLNFP RQQCNSGIPG GGQSPVDEVG 300 VPSALSRRGP TSTLTAKLNE IAYRKALSAN TVGGEQSKVH PPVKPGDITG LRDPTHLAAL 360 SSEVVDLCPV PGAGGLDYSN FRDSGSSTST SPCQSPPESS SASELRYVSS PSPDATGESS 420 DDLYNLADLL LSSDPNAEEQ LDCSWDVFGF GVKDSQFDLT DSQGSEDFLR FAGSTSPAAT 480 KKLSVTPTSV TMSPPRKFNV WRRCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 220 | 287 | 2 | 69 | ATERF1 |
3gcc_A | 3e-20 | 220 | 287 | 2 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361933.1 | 0.0 | uncharacterized protein LOC112275627 | ||||
TrEMBL | A0A2K1IK88 | 0.0 | A0A2K1IK88_PHYPA; Uncharacterized protein | ||||
STRING | PP1S335_8V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 6e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_21450V3.2.p |