PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_19070V3.1.p

Common Name

PHYPADRAFT_74816

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 262aa MW: 29414.8 Da PI: 7.3877

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_19070V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	39.7	9.9e-13	200	248	2	50
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++++++ dl+++F+ +i++AA eLg+c T+ K++C + ++R P R ++ Pp3c23_19070V3.1.p 200 TEKLKMTDLAQHFHQSINAAAWELGICHTIDKKTCCRDDVPRRPLRMLR 248 6899*****************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.33	190	261	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-14	203	248	IPR003035	RWP-RK domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MTIPLISSVR LEVSSHVSSP CRLSSMTCPL TLFRAGSYMV GDSGGVVDEE DRAIVSCWEC 60 RVCETMSVAV QPFGLEKMVL LLGTIPWLRK HGCFVRAGDE CKWETYSART ISVERDQDNA 120 AVSFENTHYL SGSVVANILS DYRSCLEMRV SRKWMCEWKS WTEQNKLLHS RGIDKIDISD 180 DAVGLIKPPK RNGAALGERT EKLKMTDLAQ HFHQSINAAA WELGICHTID KKTCCRDDVP 240 RRPLRMLRFL ATVIFDHSAN D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1IJZ6	0.0	A0A2K1IJZ6_PHYPA; Uncharacterized protein
TrEMBL	A9S5E5	0.0	A9S5E5_PHYPA; Predicted protein
STRING	PP1S49_186V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c23_19070V3.1.p
Entrez Gene	5924769

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]