PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_13360V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 505aa    MW: 57065.3 Da    PI: 4.7791
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_13360V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-1558117155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s ++GV++++++gr++A+++d  ++ ++  k+ ++++lg ++ +e Aa+a++ a++k++g
  Pp3c23_13360V3.2.p  58 SSFRGVTRHRWTGRFEAHLWDkNCWnDKqkKKgRQVYLGAYDEEEAAARAYDLAALKYWG 117
                         679******************999954486447*************************98 PP
2AP257.53.4e-18160211155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I  +  +g +k+ +lg+fgt eeAa+a+++a+ +++g
  Pp3c23_13360V3.2.p 160 SKYRGVARHHHNGRWEARIGRV--DG-NKYLYLGTFGTQEEAARAYDRAAIEYRG 211
                         89****99**********9885..33.6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1558126IPR016177DNA-binding domain
SMARTSM003808.1E-2759131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1559125IPR001471AP2/ERF domain
PROSITE profilePS5103219.40159125IPR001471AP2/ERF domain
PfamPF008472.5E-1259117IPR001471AP2/ERF domain
PRINTSPR003672.4E-56071IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17160220IPR016177DNA-binding domain
CDDcd000183.58E-26160219No hitNo description
PfamPF008476.6E-14160211IPR001471AP2/ERF domain
PROSITE profilePS5103218.518161219IPR001471AP2/ERF domain
SMARTSM003801.2E-27161225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-19161219IPR001471AP2/ERF domain
PRINTSPR003672.4E-5201221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEPRQRSLML SSLVVAEDKV CKRTVRQYPA RSKSKRKSFA ERELAGADAC GGPLKRSSSF  60
RGVTRHRWTG RFEAHLWDKN CWNDKQKKKG RQVYLGAYDE EEAAARAYDL AALKYWGQST  120
VINFKLEDYQ QQLEEMRNIT REEYLATLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR  180
VDGNKYLYLG TFGTQEEAAR AYDRAAIEYR GPAAVTNFDL TCYTQQLARK PVQSKLAFEE  240
GQGASSVSVG GSCTNDQMYP PIPLEQSCDM QLLPTLDGDD SQLVDRKSII FDSGSCRDLS  300
QLLQSPFSPG SDAGGSCIKS LTKLRYACDG GSSNNLQSLA YEDPAQITES RCSSQYQYTD  360
DSMEQDVIFN ANPYLTNDFS HQEYQIVDEK PKICLEDITY VVNECIPGDK IPEMETSGSS  420
VVTTMMIPRE SNYLKSFEID FDDDSHTECE SQIESQVDNN SFWDEFLGSN DPLLQETSFP  480
DVFDEQQTFR CPSSDSDLTL TFDM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362845.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2K1IJ690.0A0A2K1IJ69_PHYPA; Uncharacterized protein
STRINGPP1S294_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-77AP2 family protein