PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_13360V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | AP2 | ||||||||
Protein Properties | Length: 505aa MW: 57065.3 Da PI: 4.7791 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 58 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d ++ ++ k+ ++++lg ++ +e Aa+a++ a++k++g Pp3c23_13360V3.1.p 58 SSFRGVTRHRWTGRFEAHLWDkNCWnDKqkKKgRQVYLGAYDEEEAAARAYDLAALKYWG 117 679******************999954486447*************************98 PP | |||||||
2 | AP2 | 57.5 | 3.4e-18 | 160 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +g +k+ +lg+fgt eeAa+a+++a+ +++g Pp3c23_13360V3.1.p 160 SKYRGVARHHHNGRWEARIGRV--DG-NKYLYLGTFGTQEEAARAYDRAAIEYRG 211 89****99**********9885..33.6*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-15 | 58 | 126 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.1E-27 | 59 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-15 | 59 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.401 | 59 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-12 | 59 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 60 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 160 | 220 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.58E-26 | 160 | 219 | No hit | No description |
Pfam | PF00847 | 6.6E-14 | 160 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 161 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-27 | 161 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-19 | 161 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 201 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MEPRQRSLML SSLVVAEDKV CKRTVRQYPA RSKSKRKSFA ERELAGADAC GGPLKRSSSF 60 RGVTRHRWTG RFEAHLWDKN CWNDKQKKKG RQVYLGAYDE EEAAARAYDL AALKYWGQST 120 VINFKLEDYQ QQLEEMRNIT REEYLATLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR 180 VDGNKYLYLG TFGTQEEAAR AYDRAAIEYR GPAAVTNFDL TCYTQQLARK PVQSKLAFEE 240 GQGASSVSVG GSCTNDQMYP PIPLEQSCDM QLLPTLDGDD SQLVDRKSII FDSGSCRDLS 300 QLLQSPFSPG SDAGGSCIKS LTKLRYACDG GSSNNLQSLA YEDPAQITES RCSSQYQYTD 360 DSMEQDVIFN ANPYLTNDFS HQEYQIVDEK PKICLEDITY VVNECIPGDK IPEMETSGSS 420 VVTTMMIPRE SNYLKSFEID FDDDSHTECE SQIESQVDNN SFWDEFLGSN DPLLQETSFP 480 DVFDEQQTFR CPSSDSDLTL TFDM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362845.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A2K1IJ69 | 0.0 | A0A2K1IJ69_PHYPA; Uncharacterized protein | ||||
STRING | PP1S294_22V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-77 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_13360V3.1.p |