PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_13220V3.7.p

Common Name

PHYPADRAFT_197420

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 421aa MW: 46223.6 Da PI: 8.8102

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_13220V3.7.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	189	210	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+Cg+ F ++ L+ H+ + H Pp3c23_13220V3.7.p 189 CPKCGEAFFKPEALELHQVVrH 210 *****************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	187	210	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.99E-19	212	419	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.2E-16	215	419	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MPGPCFSWAK SISFKAKSIT FKSDSGSEIS HESRSGSFSS TPLRGEHSKS PPRRYGCTQG 60 CTPSIANLKE MLQGNSSLLS SKSSSHSSSC ASPPKNESYI HQTKNGDYMY RAPLQSKPNR 120 TFRKQNSFGS AQEVTRTSRE LVNIDVSTKE NLCLVKGCCE CSKHCNPGGG RIFPRDPQHH 180 GSLSPKCFCP KCGEAFFKPE ALELHQVVRH AVSELGSGNS SLNVIEIIFK TSWSVKGAPC 240 TRIERILKID NTEKHISEFH NYRDAVKKAA ADEGMQHERC LADGNELLRF YGSSFMCCLG 300 INGSTNLCSM SACNVCSIIR WGFAVRKEKG IFTTASSGKA HEIIMAEEKE NWRGKHAMLV 360 CRVIAGRIFR SPERTSRVHH ASCLPDGYDS VSPGSATNLD ELTVFNPKAV LPCFLVVYTI 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MPGPCFSWAK SISFKAKSIT FKSDSGSEIS HESRSGSFSS TPLRGEHSKS PPRRYGCTQG  60
CTPSIANLKE MLQGNSSLLS SKSSSHSSSC ASPPKNESYI HQTKNGDYMY RAPLQSKPNR  120
TFRKQNSFGS AQEVTRTSRE LVNIDVSTKE NLCLVKGCCE CSKHCNPGGG RIFPRDPQHH  180
GSLSPKCFCP KCGEAFFKPE ALELHQVVRH AVSELGSGNS SLNVIEIIFK TSWSVKGAPC  240
TRIERILKID NTEKHISEFH NYRDAVKKAA ADEGMQHERC LADGNELLRF YGSSFMCCLG  300
INGSTNLCSM SACNVCSIIR WGFAVRKEKG IFTTASSGKA HEIIMAEEKE NWRGKHAMLV  360
CRVIAGRIFR SPERTSRVHH ASCLPDGYDS VSPGSATNLD ELTVFNPKAV LPCFLVVYTI  420
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.18078	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024362662.1	0.0	uncharacterized protein LOC112275993
TrEMBL	A9TR29	0.0	A9TR29_PHYPA; Predicted protein
STRING	PP1S294_7V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-64	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pp3c23_13220V3.7.p
Entrez Gene	5944272

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]