PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_11010V3.2.p
Common NamePHYPADRAFT_231745
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 402aa    MW: 44886.1 Da    PI: 7.1204
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_11010V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.54e-3075128255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWt +LH++Fv av++ GG+ekAtPk +l+ m+vkgLt++hvkSHLQ+YR+
  Pp3c23_11010V3.2.p  75 PRLRWTADLHQCFVLAVDRCGGQEKATPKMVLQYMDVKGLTIAHVKSHLQMYRS 128
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2971131IPR009057Homeodomain-like
PROSITE profilePS5129410.89571131IPR017930Myb domain
SuperFamilySSF466897.88E-1473130IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-2275128IPR006447Myb domain, plants
PfamPF002493.8E-676127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDFPGKQSST CDGDDIDRDF EVGAGSRTSP GALSDNLSSE SNTTSTTIAQ DPSDKLSKRT  60
GSRGKVRQYV RSRLPRLRWT ADLHQCFVLA VDRCGGQEKA TPKMVLQYMD VKGLTIAHVK  120
SHLQMYRSMR SDESIQSDLS YWRGDGKFKH HSSLWVHCNT ADSIHRNNHL LDQTLANHWQ  180
TNPLSSAKLQ LEAEWEMCRR EYDARIALMM LMDQGRASNP PTPFELSPSL QQESSPPVHL  240
MKLLDGPAPR PMERASSYSS IYNRFQSSSR DYQAHDVFGK SSQHVKRPAV EHDAAQQSRH  300
SPELDSSLSL SRPYSWPSCT TSLSQWSTAM ATEHVHLVDF LSLPAAHSRG HGHMGDGLML  360
DLTMSTGYVS EHAEHEEAPH SAYSKKVKLD LTLDLSMSTT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1676130357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1676130458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362074.10.0uncharacterized protein LOC112275707
TrEMBLA0A2K1IIW00.0A0A2K1IIW0_PHYPA; Uncharacterized protein
STRINGPP1S137_203V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.14e-28G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]