PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_10680V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 567aa MW: 61177.2 Da PI: 8.0013 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.8 | 4.1e-32 | 332 | 390 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+kkversa+d ++v++ Yeg+H+h Pp3c23_10680V3.1.p 332 MEDGYKWRKYGQKAVKNSPHPRSYYRCTNPKCPVRKKVERSADDSELVITSYEGTHTHV 390 58********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 317 | 391 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-28 | 326 | 391 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.251 | 327 | 392 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-37 | 332 | 391 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 333 | 389 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MPSSTPLSTI VIEDDDGDGI RRESDLERLM RSLSDDVSSV NHQKQRVGYD QLLHQQHHEF 60 SHPSSMLTTH TTSFSQSPSF LADLLSMPSP ASTISWNSTD LDPFSRWVAS HDFSSSSTSS 120 TINHGCRLSR RQPQSQQGTH WESSPQHPPW LPQQGGESRH VYVDTLQEIV SNSPASWNQQ 180 LAVSSTAAVD LTKTSHSASR SSNRHTPLGS PSPTSWTSPT HLNSASSTIP STPNSPLISG 240 SFSIAAVEED QSHHGTGSSS VGPSVLLPHP AVGHSGSTSD KRKSPDQAAN ESCDEIQSLD 300 CNMPSTKSKR KGLKRMREPR YSIQTRSILD IMEDGYKWRK YGQKAVKNSP HPRSYYRCTN 360 PKCPVRKKVE RSADDSELVI TSYEGTHTHV SPGTGSRAAS DAPFLPDSGE YPPGGAPYVP 420 PTNLTPDLAP SSSSRTRLEY VASQSSPKTI PMMISHGATA TTATAMATAS QSRPVCEVEP 480 SFLASTRNAG LLRAQQVSAG DSHPSSQVTK SGSDNLVQNL QGAMYWRSTE AHFSGRAQGS 540 VSLRPSSTSQ ASSSGGLLED IVRHRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-27 | 320 | 392 | 2 | 74 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361570.1 | 0.0 | probable WRKY transcription factor 33 | ||||
TrEMBL | A0A2K1IIU7 | 0.0 | A0A2K1IIU7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S137_252V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-35 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_10680V3.1.p |