PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_9600V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 351aa    MW: 36973.5 Da    PI: 8.3509
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_9600V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.89.8e-32132188360
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                        +vrY+eC+kNhAa +G+ha+DGCgEfmp  geeg+++al+CaAC+CHRnFHRreve e
  Pp3c22_9600V3.3.p 132 AVRYRECQKNHAAGIGAHAIDGCGEFMPG-GEEGSVDALRCAACNCHRNFHRREVEGE 188
                        69**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-26133200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-28133185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-30134185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.278135184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-7268304IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDLGSGHESN NNQQQQVQAH PLPISPLPAP MMLPSLAASN YHSTPTSLYQ QLHHHQHALH  60
HDLASTTKLK LQNQNNTPSG NGGSLPTKNS DVKTSDQVAT DQAREILRQA VVTAVTESNA  120
ASAKAAHAKK GAVRYRECQK NHAAGIGAHA IDGCGEFMPG GEEGSVDALR CAACNCHRNF  180
HRREVEGEVL CDCKRKPKPG VQLGAGIVTP GMPTTLTSAT PVSTLALTVG GAGQMSPLAM  240
AALSAGGPTD SDEQDDGPGN VTSGGGMMMS MRSPSAIKKR FRTKFTTGQK DKMFAFAENA  300
WVAHPEARRG CRAGVLLTCG SQAARSEGLD AQQQAHYGQE AINFLAETRR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356602.11e-145zinc-finger homeodomain protein 1-like
TrEMBLA0A2K1IMX30.0A0A2K1IMX3_PHYPA; Uncharacterized protein
STRINGPP1S12_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-27homeobox protein 31