PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_9250V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HSF | ||||||||
Protein Properties | Length: 405aa MW: 45295.8 Da PI: 7.1521 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.7 | 4.2e-34 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d++++e++sw e++++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ e+ weF+ + F++g+++l Pp3c22_9250V3.1.p 26 FLTKTYHLVNDPSTNEIVSWGETNTTFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFASDFFRRGERHL 108 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k Pp3c22_9250V3.1.p 109 LCEIHRRKA 117 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.4E-57 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-36 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-33 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.7E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.6E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MSLSFDNSET GCMLLFDCHR SIPAPFLTKT YHLVNDPSTN EIVSWGETNT TFVVWRPPEF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKIV PERWEFASDF FRRGERHLLC EIHRRKALQP 120 VSVTGSVQQS RSLSPTSIED QAWSSITSAM PSPLQIIVPT HQNVTTIGVS DEMEKLRKDN 180 NMLLSEVSRL SRLYEEAMAI IQHQNFKGSS PDLITYSRIG ASGQSIDRTA SAPLPGEPAI 240 HQQFVGPVVR MEGFRELSSV HTRTTNFDPY RSPLLPTSAI QEKPSNESII SGDSKPTSLC 300 VKPTEAASSS NTSNETTPEG TRVTVKLFGV PLHGQAGDPG SFNHEASEVG MKRHQPESWD 360 TVYNPGSPRK YLRLETTPES RPSTPQQQVP WLQISATRDE GVYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 21 | 115 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16700 | 1e-163 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361198.1 | 0.0 | heat shock factor protein HSF24-like isoform X1 | ||||
TrEMBL | A0A2K1IMW0 | 0.0 | A0A2K1IMW0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S12_41V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 5e-65 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_9250V3.1.p |