PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_8210V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 491aa    MW: 53579.6 Da    PI: 6.8965
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_8210V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.9e-3457111155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl
  Pp3c22_8210V3.1.p  57 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRIMGVKGLTLYHLKSHLQKYRL 111
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.40354114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3354112IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-2457112IPR006447Myb domain, plants
SuperFamilySSF466895.2E-1757112IPR009057Homeodomain-like
PfamPF002491.0E-859110IPR001005SANT/Myb domain
PfamPF143791.1E-19151197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MFQMNSKYMS PGMSSPGPYQ QRAQPSVYVH DKLSPSYGSS HGMNGGDMVP LSPADPKPRL  60
RWTPELHERF VDAVTQLGGA DKATPKSVMR IMGVKGLTLY HLKSHLQKYR LGKQLNRDQH  120
LQNKDGSLQR SNSFSDGVQP LKSQNPQDGL QMTDQIQLQL EVQQRLQDQL EVQRHLQMRI  180
EAQGKYLQSI LEKAKETLAS HTNESPSLEA AHAELTKLAT KVTTVGNMMP SGFSNLGMAG  240
MAQPDSLMNP HPLPRQPSRN SDTSSQKSFL TNLTPNAEDS GGITGSGEPQ GATEDDDGVG  300
QESSTQFQEE MSANRLHAQG SSNGRGKPAR LVHPAAVSTT SPALMRVNVS SSPHCSSVAS  360
FWPTSSFQNM PSSSMNIRVL SESNDSNANQ LANGMVMERL TSQQRVGIPH PSVDSVAGDH  420
LGGLLQGGFA SLHDMYGQEF ERPNATMHGV AHDVKEEHSS LEQNYHGNSY LQCRGSELDL  480
NHGWERYISS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99390.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360908.10.0uncharacterized protein LOC112275109
TrEMBLA0A2K1IMQ60.0A0A2K1IMQ6_PHYPA; Uncharacterized protein
STRINGPP1S12_156V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-65G2-like family protein