PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_6360V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1212aa MW: 129844 Da PI: 7.1282

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_6360V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.6e-28	726	776	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c22_6360V3.1.p 726 EKTIGLNVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 776 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	710	796	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-25	729	776	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.6E-19	1124	1206	No hit	No description
SuperFamily	SSF54277	5.23E-19	1124	1206	No hit	No description
PROSITE profile	PS51745	21.154	1127	1209	IPR000270	PB1 domain
SMART	SM00666	6.3E-16	1127	1209	IPR000270	PB1 domain
Pfam	PF00564	6.0E-14	1128	1205	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1212 aa Download sequence Send to blast
MDETVLMDLM ELDSLSEQLL GETWAGDNHG DYGSYLAYPA SCNGGMFAAA GPPPVSQSAQ 60 MYSYGNGSMA ASLQAFQQEL MLQQVVESCQ QSIPVASSSP PSLPLSSAPV SGISSYGAAV 120 GSRLLSSSSP SPSGTARTMP GNQSLAGMIT GDGRGVGDPR GGVGGRSGVA EIRESGVVDR 180 EEEKSSLSTV EGNPVSSGNL EAGVRGPRIS AGFPLPLRDR MMQALRLIGR SLKDELVQVW 240 MPVVQGTRKC LMTRDQPFTV EPRNEQLWVY RSMSESYEFP AERVEGKVLG LPGRVFIGQK 300 VEWTPNVQYY SIQEYLRVKE AQRCDIRGSL AVPVLDPVSH QCVAVIELVG RAEKVQYGPD 360 VDIIARALQA VNLTCPVGLE TPPLERSSWG RQAALSEMAD VLKAVCEAHR LPFAQTWVPT 420 CSYGSRSDAK AQGNNAEQVN GRCSRSKVVL RTVDGDGPCY VSDSRMLGFR RACLEHVLEK 480 GQGVPGKAML TNLPVFDSDV KSFSKDEYPL GHYAKLFGLV SAVAIRLRSV HSGDEDFILE 540 FFLPTDCVDS EKQQVMLNSL SITMQRICQS LRTLSEKELE EERREALAES MEMQAKAVKE 600 EAKEVSNKED LLAAYGFNRH PGGGNGCEET TQAFPQVLQH HGVQQAAARC AVQRPPLQQF 660 SRGMPTGRGC EEGLRILESH VYPWHHHPEQ MGLEHGLGTG GFGCSSLHQD VASHRRRFER 720 RRGTTEKTIG LNVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVSRSL 780 KKLQGVIDSV QGAEGALRIN ALTGDLSSAA VAAAAVNGHM NKDMAASSQG NLSVSWSTPS 840 LNSLDVKEAH GKLGSAEPLL GPKEESRRRH DPCSPQKLLL SMLKPTLQFR PEDDRIVSSL 900 EVNAMSGASG GHGRVQLDNG DICRSNDRSS VSNIGSNPNV KAAYGSNGGH CRPGMSPLAS 960 GGILSSADTD RGCEGGHGGN RSSGNACQDV GNAGKVNGGG KGQQASPLGR PLEHLVPGRG 1020 GPGRPGDFIK AATSRGWNES RVHGGGGAMA ALKGVDQYAL YGPVDDPVSS CNHANGGEDE 1080 VTGRPGLCSL DSPGFGSSPA SDCSSPSSGV NGTSNKKAWR GREDSAAITV KVTYGLDTVR 1140 VKFAQNVSFV ELKEEVGRRL KLAGQNFNLK YLDDDEEWML LACDADLQES IDLMRVSGRH 1200 AIKLMICSNM L*

Sequence ? help Back to Top

Protein Sequence Length: 1212 aa Download sequence Send to blast

MDETVLMDLM ELDSLSEQLL GETWAGDNHG DYGSYLAYPA SCNGGMFAAA GPPPVSQSAQ  60
MYSYGNGSMA ASLQAFQQEL MLQQVVESCQ QSIPVASSSP PSLPLSSAPV SGISSYGAAV  120
GSRLLSSSSP SPSGTARTMP GNQSLAGMIT GDGRGVGDPR GGVGGRSGVA EIRESGVVDR  180
EEEKSSLSTV EGNPVSSGNL EAGVRGPRIS AGFPLPLRDR MMQALRLIGR SLKDELVQVW  240
MPVVQGTRKC LMTRDQPFTV EPRNEQLWVY RSMSESYEFP AERVEGKVLG LPGRVFIGQK  300
VEWTPNVQYY SIQEYLRVKE AQRCDIRGSL AVPVLDPVSH QCVAVIELVG RAEKVQYGPD  360
VDIIARALQA VNLTCPVGLE TPPLERSSWG RQAALSEMAD VLKAVCEAHR LPFAQTWVPT  420
CSYGSRSDAK AQGNNAEQVN GRCSRSKVVL RTVDGDGPCY VSDSRMLGFR RACLEHVLEK  480
GQGVPGKAML TNLPVFDSDV KSFSKDEYPL GHYAKLFGLV SAVAIRLRSV HSGDEDFILE  540
FFLPTDCVDS EKQQVMLNSL SITMQRICQS LRTLSEKELE EERREALAES MEMQAKAVKE  600
EAKEVSNKED LLAAYGFNRH PGGGNGCEET TQAFPQVLQH HGVQQAAARC AVQRPPLQQF  660
SRGMPTGRGC EEGLRILESH VYPWHHHPEQ MGLEHGLGTG GFGCSSLHQD VASHRRRFER  720
RRGTTEKTIG LNVLQQYFAG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVSRSL  780
KKLQGVIDSV QGAEGALRIN ALTGDLSSAA VAAAAVNGHM NKDMAASSQG NLSVSWSTPS  840
LNSLDVKEAH GKLGSAEPLL GPKEESRRRH DPCSPQKLLL SMLKPTLQFR PEDDRIVSSL  900
EVNAMSGASG GHGRVQLDNG DICRSNDRSS VSNIGSNPNV KAAYGSNGGH CRPGMSPLAS  960
GGILSSADTD RGCEGGHGGN RSSGNACQDV GNAGKVNGGG KGQQASPLGR PLEHLVPGRG  1020
GPGRPGDFIK AATSRGWNES RVHGGGGAMA ALKGVDQYAL YGPVDDPVSS CNHANGGEDE  1080
VTGRPGLCSL DSPGFGSSPA SDCSSPSSGV NGTSNKKAWR GREDSAAITV KVTYGLDTVR  1140
VKFAQNVSFV ELKEEVGRRL KLAGQNFNLK YLDDDEEWML LACDADLQES IDLMRVSGRH  1200
AIKLMICSNM L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16950	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361103.1	0.0	protein NLP1-like
Refseq	XP_024361132.1	0.0	protein NLP2-like
TrEMBL	A0A2K1IMF8	0.0	A0A2K1IMF8_PHYPA; Uncharacterized protein
TrEMBL	A0A2K1IMH2	0.0	A0A2K1IMH2_PHYPA; Uncharacterized protein
STRING	PP1S12_321V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	3e-89	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_6360V3.1.p