PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_5440V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 465aa    MW: 51291.8 Da    PI: 5.2746
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_5440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.7e-092264440
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ + +k++++fC  ++ +lC  C ++ H+       H++v
  Pp3c22_5440V3.1.p 22 RACDVCAKKNAHWFCSADDAYLCTACDTQVHSAnalslrHERV 64
                       68*****************************668888888876 PP
2CCT68.61.7e-23417460144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+a++lRYkeKr tR+F+KkirYe+RK++Ae+RpR+KGrFvk++
  Pp3c22_5440V3.1.p 417 RDARVLRYKEKRATRLFSKKIRYEVRKVNAERRPRMKGRFVKRT 460
                        99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-81966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2531966IPR000315B-box-type zinc finger
CDDcd000217.79E-92266No hitNo description
PfamPF006432.7E-82264IPR000315B-box-type zinc finger
PROSITE profilePS5101715.626417459IPR010402CCT domain
PfamPF062039.3E-18417459IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MATKVANSSV AIAMAFAGRA VRACDVCAKK NAHWFCSADD AYLCTACDTQ VHSANALSLR  60
HERVRLSPNG TPMLSLAKES KVPDEAGCGI HRMKKLHPAP KQVQPARKRS KVTKPYSHHL  120
RKLTRMVSKD MMKSEDSVAV KAELELFDFL DTDEFLNNGN QEVPSLSTVM DPDSPCSSDY  180
DLLSSDYEIQ ESDHLASADS FASYFKGKAA HSQTFSDDSD QFLVPDAFDF CLNVDMPVAT  240
TTPADANIDL SGEAFFLPGD IPGLDGFESF VPEMGLTDDF SLTFDLALQN GLEAPIEATE  300
PAKFEYKPNP AEPDHITAGP FAKFFAQKPK AESQELISPE QVKREAMEML KCCREGDHEG  360
LNMPSLKLNM KDILAEWSNR GEPWISSDDS ISSGSDVGLV PDMDAVTADE SQSGGDRDAR  420
VLRYKEKRAT RLFSKKIRYE VRKVNAERRP RMKGRFVKRT SSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.191680.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361267.10.0zinc finger protein CONSTANS-LIKE 8-like
TrEMBLA0A2K1IMC50.0A0A2K1IMC5_PHYPA; Uncharacterized protein
STRINGPP1S12_404V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.13e-23B-box type zinc finger protein with CCT domain