PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_20520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 205aa    MW: 22991.9 Da    PI: 10.1938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_20520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.8e-14107148347
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                         ++GVr ++  ++Wv eIr  s   ++++++lg++ t+eeAa+a++
  Pp3c22_20520V3.1.p 107 FRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 148
                         8***************99942...35******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.791106166IPR001471AP2/ERF domain
SMARTSM003801.3E-13106169IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-13106162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-19106164IPR001471AP2/ERF domain
CDDcd000187.49E-16107152No hitNo description
PfamPF008471.1E-9107148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNLTISSILE HGKPKSKTWW DSCGGSNKGR EQGLLLPSKI DSSRVKKEIE ECKSESSQEG  60
ERKGMRLAAK DNSGRNASRF RNIDLNKMPS AWDTDDASVG TGDTTAFRGV RHRPELNKWV  120
TEIRPTSQKR KIWLGTYETP EEAARAYDVG IFYTKKKIPY NFEDSPQQLQ LHPIPPELPW  180
ESFAALVKQR ATSAAKRARV PSSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119850.0gametophore| protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361002.11e-151ethylene-responsive transcription factor ERF110-like
RefseqXP_024361003.11e-151ethylene-responsive transcription factor ERF110-like
RefseqXP_024361005.11e-151ethylene-responsive transcription factor ERF110-like
RefseqXP_024361006.11e-151ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2K1IP521e-149A0A2K1IP52_PHYPA; Uncharacterized protein
STRINGPP1S225_102V6.11e-150(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-13related to AP2 11