PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_1800V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 43870.6 Da PI: 5.4651 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 104 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p++ r+r +lg+f ta eAa a++ a++kl+g Pp3c22_1800V3.2.p 104 EFRGVRQRT-WGKWVAEIREPKK---RARLWLGSFSTAREAALAYDIAARKLYG 153 59****999.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.49E-29 | 103 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-28 | 104 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 104 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-35 | 104 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.641 | 104 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-9 | 105 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-19 | 105 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.7E-9 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MTVSGRTLQA ERGRGEVVIT VAKSKVSGVV NSANIGISSN FPSAHWEAIA TKTIQRIGMQ 60 LGSGGDDKLS PTSGHIEKPA RKPGKRWKKG AMKGKGGPEN AACEFRGVRQ RTWGKWVAEI 120 REPKKRARLW LGSFSTAREA ALAYDIAARK LYGSMAELNL PPSESAGIDS VPSSTPTKES 180 SSPPRVMHDV EITEHLELPR QHSLGTSASA GSSSRTSMHI GIREDHFDVE LVMADSGRAF 240 GASDARQVFP HEMVRDSRGM GEAGPSLEMG TDSSSSSQVN PPHELFSITP EFQQHRYYNL 300 QGSRLGTSLS GEYLKDIESF LNRMDDDDDY ALGSNSSLSQ STESAGGSYP PDPHWDDENL 360 GTQFLNSELE SLDSVLNEPL VPENVELWDT RDTLPPSDPS TWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 105 | 161 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360275.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os05g0549800-like | ||||
TrEMBL | A0A2K1ILX0 | 0.0 | A0A2K1ILX0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S162_92V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_1800V3.2.p |