PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_17873V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 845aa    MW: 93248.6 Da    PI: 9.062
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_17873V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63e-08316365155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV  + +++rW+A+I+          +++lg   t e+ a+a+++a++ l+g
  Pp3c22_17873V3.1.p 316 SPYRGVNHYTRTNRWEAHIWY------AgGQIYLGASLTMEQGARAYDKAALFLFG 365
                         68****99**********988......339**********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-9316373IPR016177DNA-binding domain
PROSITE profilePS5103213.301317373IPR001471AP2/ERF domain
SMARTSM003807.0E-10317379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-9318373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MEHRLKSRKR CTAELGYLPS VTGAPPSAQN HISKDDVIPK YPKRKSTGIE RSCWEFFVGH  60
TFTDHATDLI ITSGEHKKEP LSIKSDAFVV HHNITWAEND SALSGEKQRP LRLKILKGLS  120
ELNTGDPIYV TVECIIRDDF PENPKHPGDT KVICRPIDVD PEMGSKVVSG NKSDFILGKS  180
RVFPFDILLC TEKYEDISDK ESLWQEQMRK LQETPLSYVE VLDDVVAPRL DETYEGVSVA  240
SNGDHLLERC HPCFLCTSCT KQWGGSLPER YFPSARKEFF RSAGQESPPV LDSEKTIAAT  300
KRKRGQGRHG PKSKTSPYRG VNHYTRTNRW EAHIWYAGGQ IYLGASLTME QGARAYDKAA  360
LFLFGAETEV NFRPEDYQEE ICFLHRLTQG QMVAYLRREA RGTGEEVRYP GVAKINAKMY  420
EAFYRPRKDK ESQEHIGYFR SEDDAVRAVM REAKRRKNFN LAARIMDIHH LRTVRPAPGK  480
VKRPRKPRKN LFQIGRGTRD AASVPEQESD DEIMQQRRKR TSRSKNLNAA LPAQRDVSVV  540
ESSVSALRKR QPRKNASRCK ITTSSSVLRV PSLHDIAVPE GASVAASANP NPQTKKMLTR  600
AQKSATRSPV VPTVPDFAIP AACNTALPVR AYKTRSRRAP LRHPQSEETS IETVLANTEL  660
MVVDLADSAP AADGALSDSG DQLSLTEISG YASPTTNDSS IWSNNLSPST VTVTCDFDHG  720
VAVAGHQSPD HVRMVLGSPV VALDACDLPS ETPIVQVEPS FPQLAAGAFG QWPTWLSLSQ  780
LPFASRSQGG LVGVAPTSLS PAVIRPVARR LNATGGRVEL DLFPHLPAGG GGLCVDLNGP  840
PPSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1INX60.0A0A2K1INX6_PHYPA; Uncharacterized protein
STRINGPP1S100_113V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-18target of early activation tagged (EAT) 2