PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_14220V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 678aa    MW: 73966.6 Da    PI: 7.9513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_14220V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13425476155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr l+P +   + +K + a+i+  A+e++k+L+
  Pp3c22_14220V3.3.p 425 QRMTHIAVERNRRKQMNEHLAALRALMPGS---YVQKGDQASIVGGAIEFVKELE 476
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.96E-14423480No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13423479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16424490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.701424475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11425476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-10430481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MALPMQIKIS GADRILKITT ISSVSATKNW SRDYDSRELI STCNSHVCPA LTFGLPKRGV  60
LRCIKSRSWP CTNLRLILHA LLWLPSHAKG GPHMHMTETQ ASAMDYPETV QLSTSRTFWN  120
SHDPTLDPFD ETLVSTLAPL EASCSSTFLF QATSSTCDNG GDSPVFKRPY QQTMFGESPE  180
GGGESRGTTE SYCINVPAGS TADSSQFSWF SSSPHFHGAQ GVSAFQTQFF ESSTSADVRV  240
QLHHQGGGHS QDQFGTLNSS SAQASSITHN AQDLGHGSDY QAFLKPLMRQ PSFSRPDSGI  300
QVVTKQLNAK ASWQSTLFQT KMAFDQRKNS NKESLGSPCS VISGITKVLQ GVEPVSSDHM  360
ESFGPSTSSA YEEVKNVKFQ ETPPECEGAT QSMLGAQEAS GLMNHLRPKR KRSRAPKQGD  420
EVESQRMTHI AVERNRRKQM NEHLAALRAL MPGSYVQKGD QASIVGGAIE FVKELEHLLH  480
CLQAQKRRRA YNDISTAVIP TSSRIAMPSL DQLCAIQPPF TFQSPQRLID QGPFHLGVPT  540
ESLGSNTRNS QLVGFFPPSQ LPAPPIPLLA PASSSLLGMN EIVGEAKSDM ASVEVKMVGS  600
DQAMVKIMAP RRSGQLLRTV VALESLALTV MHTNITTVHH TVLYSFHVQI SLHCRLNVDE  660
VAAALHQTFS SLHSLQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425436RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360530.10.0transcription factor FAMA-like isoform X2
TrEMBLA0A2K1ING00.0A0A2K1ING0_PHYPA; Uncharacterized protein
STRINGPP1S71_321V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.17e-39bHLH family protein