PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_130V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 485aa    MW: 53603.9 Da    PI: 4.9248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_130V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.7e-32321742128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.......lelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                       p+G+rF+P+deel+ e+L++k+ +++         ++  + ++e +i++++P++Lp  vk++ +++++F++ + +y+tg+rk+r+        
  Pp3c22_130V3.4.p  32 PAGVRFDPSDEELL-EHLAAKIGRSSrkphpflD-EFIhTlVEEDGICRTHPENLP-GVKKDGSSCHYFHRPSMAYTTGTRKRRKiqtddvpd 121
                       89************.99****9888877776642.22233377779**********.7778899********************856666555 PP

               NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         ++ +W++tgk+++v +  g+  g kk++v+y   g+++k  kt+Wvmh+y+l
  Pp3c22_130V3.4.p 122 gGTDVRWHKTGKTRPVSQ-CGKILGHKKIMVLYraMGKKSKNLKTNWVMHQYHL 174
                       533688**********99.999***********6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3624193IPR003441NAC domain
PROSITE profilePS5100532.66831193IPR003441NAC domain
PfamPF023655.9E-1432174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDRVASNRIL GASKLRCDNN AAAHQVKLDS FPAGVRFDPS DEELLEHLAA KIGRSSRKPH  60
PFLDEFIHTL VEEDGICRTH PENLPGVKKD GSSCHYFHRP SMAYTTGTRK RRKIQTDDVP  120
DGGTDVRWHK TGKTRPVSQC GKILGHKKIM VLYRAMGKKS KNLKTNWVMH QYHLGSNEEE  180
TDGELVVCKV FFQKAPRSCP SRKMEVLAVD DEDCEPSESD IGFQAPGLSG YSPSVSVVTR  240
GLPPLSPLSC KPSRTAKQLY AEPTESNSEI FDPQLLATQS KQKAVFARSR INQYNDEGIG  300
EDIGVDMNHK ATACVVYKPG GSLVQTMRAA VYADNQDTHI NGGLSGHLSR EGEDESFQAV  360
NLDEEGSWGL DQVMEAEHIE QDPSIMGLLC DEHLDGDPLA EDANYEDFNF RSLSYDVGCS  420
VEEELFRVLT GVERSVVDPA LDALELDTPP DMLEYPVVTS QEVKDWLGKH PILGLDNTDS  480
QSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-143017414140Stress-induced transcription factor NAC1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.38470.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361185.10.0uncharacterized protein LOC112275234 isoform X1
RefseqXP_024361186.10.0uncharacterized protein LOC112275234 isoform X1
TrEMBLA0A2K1ILP60.0A0A2K1ILP6_PHYPA; Uncharacterized protein
STRINGPP1S251_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.16e-74NAC domain containing protein 73