PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_11760V3.2.p

Common Name

PHYPADRAFT_93521

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 566aa MW: 62770.5 Da PI: 9.4814

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_11760V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	526	548	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg++F ++L++H+r H Pp3c22_11760V3.2.p 526 HECLQCGRTF-KLESLQVHMRGcH 548 78******.********955 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MIEKSSVAKQ CNAGSQTPFR ESSLHKDAAT DRKELIDSST ATPIMKDNMS VFSPSPAVSS 60 VPKRRMWEKE IDKSTIYTEL IHSKSSDDEQ RIPRMEVHDI ITETSSPCLS APEDPFLYGV 120 LRKATRLGSF RPRMCRGIDV VDSTRARTKM PFRSKARDES NKVSKSPGKN TGFLVDESPK 180 SINSCPEASE KQNTHTSSDQ PTMEYMTLLQ YFESGERPSP VPKLMSEAPS AEDSSKQQLS 240 FVQAAPQPLG TAALVTDLPE IDPLLPELRS FGNNALDLSY RETMEALAKL PARGVCRMRT 300 IPQVSEVPEP VTRPVPRRDE HKVMSGSKGD KQEAKLDSKS PTASTPPSRQ APKSRVEPDT 360 PSPGSMHNTH GRTTGKTQEE PPNSVTSKQR RPNAKKCSET SISRNLSKES SPKRHDEQFH 420 TVEESTISRV SDSSTFDSRT SHAGSGNNQG LKRTTQRATE AADKASLKSS LNEGSKGWPF 480 EHPSRPKDFK SREDRLLTPG LTQMDWEKSL QEAVMKSEPP VDMVLHECLQ CGRTFKLESL 540 QVHMRGCHAI NKPKSLSTQR RRVSQ*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MIEKSSVAKQ CNAGSQTPFR ESSLHKDAAT DRKELIDSST ATPIMKDNMS VFSPSPAVSS  60
VPKRRMWEKE IDKSTIYTEL IHSKSSDDEQ RIPRMEVHDI ITETSSPCLS APEDPFLYGV  120
LRKATRLGSF RPRMCRGIDV VDSTRARTKM PFRSKARDES NKVSKSPGKN TGFLVDESPK  180
SINSCPEASE KQNTHTSSDQ PTMEYMTLLQ YFESGERPSP VPKLMSEAPS AEDSSKQQLS  240
FVQAAPQPLG TAALVTDLPE IDPLLPELRS FGNNALDLSY RETMEALAKL PARGVCRMRT  300
IPQVSEVPEP VTRPVPRRDE HKVMSGSKGD KQEAKLDSKS PTASTPPSRQ APKSRVEPDT  360
PSPGSMHNTH GRTTGKTQEE PPNSVTSKQR RPNAKKCSET SISRNLSKES SPKRHDEQFH  420
TVEESTISRV SDSSTFDSRT SHAGSGNNQG LKRTTQRATE AADKASLKSS LNEGSKGWPF  480
EHPSRPKDFK SREDRLLTPG LTQMDWEKSL QEAVMKSEPP VDMVLHECLQ CGRTFKLESL  540
QVHMRGCHAI NKPKSLSTQR RRVSQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361287.1	0.0	uncharacterized protein LOC112275280 isoform X2
TrEMBL	A0A2K1IN63	0.0	A0A2K1IN63_PHYPA; Uncharacterized protein
STRING	PP1S244_1V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c22_11760V3.2.p
Entrez Gene	5941949

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]