PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_11760V3.1.p

Common Name

PHYPADRAFT_93521

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 616aa MW: 68199.5 Da PI: 9.4433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_11760V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	576	598	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg++F ++L++H+r H Pp3c22_11760V3.1.p 576 HECLQCGRTF-KLESLQVHMRGcH 598 78******.********955 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MSISNVISRT VRRELLLQGD VYDKDTSSIS GNVGEDKDHL PRNGTKSVAS MIEKSSVAKQ 60 CNAGSQTPFR ESSLHKDAAT DRKELIDSST ATPIMKDNMS VFSPSPAVSS VPKRRMWEKE 120 IDKSTIYTEL IHSKSSDDEQ RIPRMEVHDI ITETSSPCLS APEDPFLYGV LRKATRLGSF 180 RPRMCRGIDV VDSTRARTKM PFRSKARDES NKVSKSPGKN TGFLVDESPK SINSCPEASE 240 KQNTHTSSDQ PTMEYMTLLQ YFESGERPSP VPKLMSEAPS AEDSSKQQLS FVQAAPQPLG 300 TAALVTDLPE IDPLLPELRS FGNNALDLSY RETMEALAKL PARGVCRMRT IPQVSEVPEP 360 VTRPVPRRDE HKVMSGSKGD KQEAKLDSKS PTASTPPSRQ APKSRVEPDT PSPGSMHNTH 420 GRTTGKTQEE PPNSVTSKQR RPNAKKCSET SISRNLSKES SPKRHDEQFH TVEESTISRV 480 SDSSTFDSRT SHAGSGNNQG LKRTTQRATE AADKASLKSS LNEGSKGWPF EHPSRPKDFK 540 SREDRLLTPG LTQMDWEKSL QEAVMKSEPP VDMVLHECLQ CGRTFKLESL QVHMRGCHAI 600 NKPKSLSTQR RRVSQ*

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MSISNVISRT VRRELLLQGD VYDKDTSSIS GNVGEDKDHL PRNGTKSVAS MIEKSSVAKQ  60
CNAGSQTPFR ESSLHKDAAT DRKELIDSST ATPIMKDNMS VFSPSPAVSS VPKRRMWEKE  120
IDKSTIYTEL IHSKSSDDEQ RIPRMEVHDI ITETSSPCLS APEDPFLYGV LRKATRLGSF  180
RPRMCRGIDV VDSTRARTKM PFRSKARDES NKVSKSPGKN TGFLVDESPK SINSCPEASE  240
KQNTHTSSDQ PTMEYMTLLQ YFESGERPSP VPKLMSEAPS AEDSSKQQLS FVQAAPQPLG  300
TAALVTDLPE IDPLLPELRS FGNNALDLSY RETMEALAKL PARGVCRMRT IPQVSEVPEP  360
VTRPVPRRDE HKVMSGSKGD KQEAKLDSKS PTASTPPSRQ APKSRVEPDT PSPGSMHNTH  420
GRTTGKTQEE PPNSVTSKQR RPNAKKCSET SISRNLSKES SPKRHDEQFH TVEESTISRV  480
SDSSTFDSRT SHAGSGNNQG LKRTTQRATE AADKASLKSS LNEGSKGWPF EHPSRPKDFK  540
SREDRLLTPG LTQMDWEKSL QEAVMKSEPP VDMVLHECLQ CGRTFKLESL QVHMRGCHAI  600
NKPKSLSTQR RRVSQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361287.1	0.0	uncharacterized protein LOC112275280 isoform X2
TrEMBL	A0A2K1IN63	0.0	A0A2K1IN63_PHYPA; Uncharacterized protein
STRING	PP1S244_1V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c22_11760V3.1.p
Entrez Gene	5941949

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]