PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_11040V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 324aa    MW: 35007.1 Da    PI: 9.1627
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_11040V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.4e-20170204135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt+kTplWR+gp g+k+LCnaCG++++k g+
  Pp3c22_11040V3.2.p 170 CAHCGTSKTPLWRNGPGGPKSLCNACGIRFKKAGR 204
                         ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.52E-13164205No hitNo description
SMARTSM004012.2E-18164216IPR000679Zinc finger, GATA-type
CDDcd002025.34E-15169214No hitNo description
Gene3DG3DSA:3.30.50.109.3E-17169204IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-17170204IPR000679Zinc finger, GATA-type
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651170203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEPSYCNLS LAMNCTLSLG STTSRTDIPA RLSRAGSPNQ NLAWSISVHS DREVPSLDKS  60
DQDVSWGGSS DPDGSPEYYP KISERQGRFS DGGRKSFKTW TKSSSRSYKD GVEISQALFG  120
MVRNSSYSNR SSPQPWVPNN LPHSAVAEGN TAASKVERCM QEADRHVHVC AHCGTSKTPL  180
WRNGPGGPKS LCNACGIRFK KAGRRSAANG NPEEPGSLPA APNFAKRKQA AVSRDPHGWV  240
LSPDAKPRKR SRGPLLRAPD NLMFDSCVPW QPCRLVGSPK RSPGSRLASD HENKLNMQFG  300
SYSSDEEEGA VLLMALSCGV VDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.29270.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361225.10.0uncharacterized protein LOC112275248
TrEMBLA0A2K1IN320.0A0A2K1IN32_PHYPA; Uncharacterized protein
STRINGPP1S121_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-15GATA transcription factor 19