PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_10880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 575aa MW: 62101.1 Da PI: 5.5655 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g Pp3c22_10880V3.2.p 25 RYRGVRRRP-WGRYAAEIRDPH----TrERRWLGTFDTAEQAAVAYDLAARSMRG 74 69*******.**********73....25999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.339 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-20 | 25 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-28 | 25 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.57E-28 | 25 | 81 | No hit | No description |
SMART | SM00380 | 1.2E-31 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-11 | 25 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGARAIERKG ACKVKVKVKK PQEGRYRGVR RRPWGRYAAE IRDPHTRERR WLGTFDTAEQ 60 AAVAYDLAAR SMRGLKAKTN FVYPTHQTCL MSAALAASRA SEQSEGGGFF GSVSGGRKDR 120 NLVGSRALVS GGPTNGAAVS NLNFMLGPRE SLLNPYSELA YRHMYESVER LASAISDPRP 180 RRSPHENGSL SESCASGKTI DVRKGFGEKQ HLAVYDVQES VCCQTSERGA VESSVLHTGS 240 DCVTVSVPSP EAICIGDEPS SCHVVKVPNE STFTESVGPL RSGDNEHFTS RTSGPSRFHE 300 DGVGSLAQVV SKFVCIEQGH VTGSSSSHTI SLIDSSQCFV STQASNSEDL STSSVSPSID 360 TATSPNSVRF LSVSVGSSDP PSAAEMIYCS TPIFNQNPDD LQNILIPCAS SSLLNKLHQS 420 GGPRSNVSSQ SIMTRHDTWN GICCETSESW SSLCELPAAW QYYTDPGMVA NDMEYELIDV 480 TRELAMRKSV ACQSCQDDGC EECFMNGDWQ FLHCDAADSL ISCVSNIGGD EYLCNDIYSN 540 HGIHADSLSQ ALCNEHQSFA VLAEEPLILH IPDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 22 | 81 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360528.1 | 0.0 | uncharacterized protein LOC112274907 | ||||
TrEMBL | A0A2K1IN31 | 0.0 | A0A2K1IN31_PHYPA; Uncharacterized protein | ||||
STRING | PP1S121_50V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 7e-21 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_10880V3.2.p |