PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_10880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 575aa    MW: 62101.1 Da    PI: 5.5655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_10880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-172574255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Pp3c22_10880V3.1.p 25 RYRGVRRRP-WGRYAAEIRDPH----TrERRWLGTFDTAEQAAVAYDLAARSMRG 74
                        69*******.**********73....25999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.3392582IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-202582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-282581IPR001471AP2/ERF domain
CDDcd000186.57E-282581No hitNo description
SMARTSM003801.2E-312588IPR001471AP2/ERF domain
PfamPF008478.4E-112574IPR001471AP2/ERF domain
PRINTSPR003675.6E-92637IPR001471AP2/ERF domain
PRINTSPR003675.6E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGARAIERKG ACKVKVKVKK PQEGRYRGVR RRPWGRYAAE IRDPHTRERR WLGTFDTAEQ  60
AAVAYDLAAR SMRGLKAKTN FVYPTHQTCL MSAALAASRA SEQSEGGGFF GSVSGGRKDR  120
NLVGSRALVS GGPTNGAAVS NLNFMLGPRE SLLNPYSELA YRHMYESVER LASAISDPRP  180
RRSPHENGSL SESCASGKTI DVRKGFGEKQ HLAVYDVQES VCCQTSERGA VESSVLHTGS  240
DCVTVSVPSP EAICIGDEPS SCHVVKVPNE STFTESVGPL RSGDNEHFTS RTSGPSRFHE  300
DGVGSLAQVV SKFVCIEQGH VTGSSSSHTI SLIDSSQCFV STQASNSEDL STSSVSPSID  360
TATSPNSVRF LSVSVGSSDP PSAAEMIYCS TPIFNQNPDD LQNILIPCAS SSLLNKLHQS  420
GGPRSNVSSQ SIMTRHDTWN GICCETSESW SSLCELPAAW QYYTDPGMVA NDMEYELIDV  480
TRELAMRKSV ACQSCQDDGC EECFMNGDWQ FLHCDAADSL ISCVSNIGGD EYLCNDIYSN  540
HGIHADSLSQ ALCNEHQSFA VLAEEPLILH IPDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2022811171Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360528.10.0uncharacterized protein LOC112274907
TrEMBLA0A2K1IN310.0A0A2K1IN31_PHYPA; Uncharacterized protein
STRINGPP1S121_50V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.17e-21DORNROSCHEN-like