PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_10160V3.4.p | ||||||||
Common Name | PHYPADRAFT_84262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 668aa MW: 72465.6 Da PI: 8.6305 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 73.5 | 2.3e-23 | 114 | 179 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++e + ++l+e+a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g Pp3c22_10160V3.4.p 114 RKDKSLGLLCENFLNLYGTEEGECISLDEAASRL---GV--ERRRIYDIVNVLESIEILIRKAKNRYTWHG 179 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 71.3 | 1.1e-22 | 258 | 338 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s++++v+l+++a+ L+ + + k+k+RR+YDi+N+L++l+liek ++k++++w g Pp3c22_10160V3.4.p 258 RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLGDckdasKLKTKVRRLYDIANILSSLQLIEKthmaeNRKPAFKWLG 338 689***************************************99**********************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-27 | 109 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-15 | 113 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.4E-30 | 114 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-20 | 115 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.8E-24 | 254 | 339 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.3E-33 | 258 | 338 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.8E-19 | 260 | 338 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.99E-12 | 260 | 339 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MDSSPLTKQL RRSPLQSRAL ASGDKMPPVT PDTRNDVNTA RGRVSQNSDP DSMSRGKENR 60 VLRGGCSVKR LTGSPALRKY DALDESTQSL SLSIDGESHV QSDACTRAHS SYNRKDKSLG 120 LLCENFLNLY GTEEGECISL DEAASRLGVE RRRIYDIVNV LESIEILIRK AKNRYTWHGC 180 TRLPKALQAL KDSALRDYGL GEFANTSSPE ERMPAAVTND CDSDDDEERK NLPSQGSEGR 240 ASVQSQQSEA PKAKTDCRRE KSLGLLSQKF VQLFLVSQSQ VVSLEDAARL LLGDCKDASK 300 LKTKVRRLYD IANILSSLQL IEKTHMAENR KPAFKWLGTK DDLVGPATRL RISGTQFQSQ 360 HSSQSPACSS LSVEKTKRGL KRACMNAPSV EATPSKRAAL KPLQPRDPNL MTPYTRDVIN 420 KPVPLYPRAS QIDSPVSDHR TLSLAASLHD AAESPTARGT PVGSTGGWRE WGDIVQTQVV 480 PITPPWSAQC CDQAGSSNAA CPTGRSSPIC TPSVTSLTPG TPKMTPTSGR SCCTCQSRGS 540 LDNFFPFRSP GALFNPFFPP PPFPMHPQIA AAAGFPSPPP GVGPEQYLGR DPAPVQECAQ 600 HRSGNGVAAA AAMQYQNETL GHMFAHYVEA WKSWYLQAAS MSNPSCFESP LPGPRSSTPQ 660 SPLQEGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-47 | 114 | 330 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361460.1 | 0.0 | transcription factor E2F8-like | ||||
TrEMBL | A9SUT6 | 0.0 | A9SUT6_PHYPA; Predicted protein | ||||
STRING | PP1S121_120V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 4e-59 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_10160V3.4.p |
Entrez Gene | 5933291 |
Publications ? help Back to Top | |||
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