PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_10160V3.2.p | ||||||||
Common Name | PHYPADRAFT_84262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 456aa MW: 48951.2 Da PI: 8.5379 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.1 | 6.3e-23 | 46 | 126 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s++++v+l+++a+ L+ + + k+k+RR+YDi+N+L++l+liek ++k++++w g Pp3c22_10160V3.2.p 46 RREKSLGLLSQKFVQLFLVSQSQVVSLEDAARLLLGDckdasKLKTKVRRLYDIANILSSLQLIEKthmaeNRKPAFKWLG 126 689***************************************99**********************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.2E-24 | 42 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.3E-33 | 46 | 126 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-19 | 48 | 126 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.16E-12 | 48 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MPAAVTNDCD SDDDEERKNL PSQGSEGRAS VQSQQSEAPK AKTDCRREKS LGLLSQKFVQ 60 LFLVSQSQVV SLEDAARLLL GDCKDASKLK TKVRRLYDIA NILSSLQLIE KTHMAENRKP 120 AFKWLGTKDD LVGPATRLRI SGTQFQSQHS SQSPACSSLS VEKTKRGLKR ACMNAPSVEA 180 TPSKRAALKP LQPRDPNLMT PYTRDVINKP VPLYPRASQI DSPVSDHRTL SLAASLHDAA 240 ESPTARGTPV GSTGGWREWG DIVQTQVVPI TPPWSAQCCD QAGSSNAACP TGRSSPICTP 300 SVTSLTPGTP KMTPTSGRSC CTCQSRGSLD NFFPFRSPGA LFNPFFPPPP FPMHPQIAAA 360 AGFPSPPPGV GPEQYLGRDP APVQECAQHR SGNGVAAAAA MQYQNETLGH MFAHYVEAWK 420 SWYLQAASMS NPSCFESPLP GPRSSTPQSP LQEGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 2e-21 | 37 | 118 | 143 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361460.1 | 0.0 | transcription factor E2F8-like | ||||
TrEMBL | A0A2K1IMZ4 | 0.0 | A0A2K1IMZ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S121_120V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 5e-25 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_10160V3.2.p |
Entrez Gene | 5933291 |
Publications ? help Back to Top | |||
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