PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c21_8710V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 548aa MW: 60563.7 Da PI: 5.2511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.8e-18 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g Pp3c21_8710V3.1.p 25 KYRGVRRRP-WGRYAAEIRDPH----TrERRWLGTFDTAEQAAVAYDLAARSMRG 74 8********.**********73....25999**********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.286 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 25 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.25E-29 | 25 | 81 | No hit | No description |
SMART | SM00380 | 2.2E-32 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-11 | 25 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 25 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 548 aa Download sequence Send to blast |
MGEMAARAVD RKSGSKKAKM AQEGKYRGVR RRPWGRYAAE IRDPHTRERR WLGTFDTAEQ 60 AAVAYDLAAR SMRGLKARTN FVYPTHQTCL MSAALAASRA SGQSNGDGFF GGTSSGKHGR 120 KMDWSMALMP GGNDESVGVP GRSNFRVGLM DTMPDPHSEP AYRHMYETVE RLASAISDPR 180 PRNSPHKNDD FLRKSANRET IDDSKSSETR EQWAVHDVQE FNRCHGLEQS IVESSVMRGG 240 RGCVTVEVSS LEGNCLGDQP TSHYQVTVSN GSTLTRNDDP LRSSDNAQSS RASCSSKFYE 300 HLAGTLSQVV FKYVNVDKEL PAVGSNSVHR SLVDSSNCFL TTEVSHSEDS TTLPVSSFVD 360 TATSLDSARL LSIPVEALEP CSGAEMFCNS PIFNQNNDKL QSIFPSTVSF AMHTNDQQAD 420 WPCSNLNQPS VTHLDTWNGV TYEPSESWGN LCELPAVWQY YADPEMVAND MEGEMIDVTH 480 ELAMRTSSDC RNFQDNDCGD CFTVGNWEFS HCDTAESSMS AINGDEYFCK DKYTNHGDHV 540 DMSSFRI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 21 | 81 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359020.1 | 0.0 | uncharacterized protein LOC112274089 | ||||
TrEMBL | A0A2K1IR75 | 0.0 | A0A2K1IR75_PHYPA; Uncharacterized protein | ||||
STRING | PP1S345_35V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24590.1 | 6e-31 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c21_8710V3.1.p |