PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_6770V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 493aa MW: 54116.9 Da PI: 6.8113 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.2 | 1e-29 | 299 | 351 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wtp+LH+rFveav +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Pp3c21_6770V3.2.p 299 ARLVWTPQLHKRFVEAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 351 79******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.644 | 293 | 354 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-19 | 296 | 355 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-30 | 297 | 356 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 299 | 351 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 301 | 350 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MMTKDDDQVS DWTKGLPTSE ELTPLSHTLI SRILASAFRI KHEEPMTEED VRRESQATIH 60 NLFKQKPIPS FDAFPAFQEH DDAGGYGYGV EGRSSGEEFR GNRRVEEEFR ENRGDEEFRK 120 EFRGNRRTEE RRDGRSLAIE DRMDYRGSAF GSEIPKQTRA SGSDTTTPPK GSMKSNTGAG 180 GSVGQGLQGS VSITATNTGR EHSSTPVGNT RPARYGHGAD TANTHERPIQ PSLPYIMNSL 240 PYGPYERVPE SSYGGPREDE SSRGGGSTDF GRKMADFELE DANSAGGLMN SNDEPLKRAR 300 LVWTPQLHKR FVEAVGHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS 360 NDGPSASDHL FASMPLPPGI MAPGMNPHFM GSSSSQRDDG GSAFATPIMP MPFQGLVRPG 420 PLGGYEYMPY GPMGGGFMQR APMPDPREAA TENESRSHAS NNRSNKSQSQ SQSHQSLPSS 480 SYQHALPLFP TN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-31 | 298 | 354 | 1 | 57 | Transcription factor LUX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.9208 | 0.0 | gametophore| protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359318.1 | 0.0 | uncharacterized protein LOC112274242 | ||||
Refseq | XP_024359319.1 | 0.0 | uncharacterized protein LOC112274242 | ||||
Refseq | XP_024359320.1 | 0.0 | uncharacterized protein LOC112274242 | ||||
Refseq | XP_024359321.1 | 0.0 | uncharacterized protein LOC112274242 | ||||
TrEMBL | A0A2K1IQZ6 | 0.0 | A0A2K1IQZ6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S27_359V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 5e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_6770V3.2.p |